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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.353377 (18 seq.)
>A171000341
CP001014
Thermoproteota
Pyrobaculum neutrophilum V24Sta [CP001014]
1106474
1106400
-
Ala
TGC
-
¡û
>A171002944
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
609191
609263
+
Ala
TGC
-
¡û
>A171002956
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
1343153
1343080
-
Ala
CGC
-
¡û
>A17A000761
CP003098
Thermoproteota
Pyrobaculum ferrireducens 1860 [CP003098]
1734130
1734039
-
Ala
CGC
-
¡û
>A179000317
CP003098
Thermoproteota
Pyrobaculum ferrireducens 1860 [CP003098]
1734130
1734039
-
Ala
CGC
-
¡û
>A173000013
CP001014
Thermoproteota
Pyrobaculum neutrophilum V24Sta [CP001014]
1664444
1664536
+
Ala
CGC
-
¡û
>WENV180014231
FPIC01105892
[FPIC] soil metagenome; Soil
1
73
+
Ala
TGC
[ENA]
¢þ
>At0200
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
1424045
1424139
+
Ala
TGC
[Ensembl]
¡û
>At0216
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
303676
303602
-
Ala
CGC
[Ensembl]
¡û
>At0263
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
1347059
1346988
-
Ala
TGC
[Ensembl]
¡û
>At0298
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
1252620
1252726
+
Ala
CGC
[Ensembl]
¡û
>At0311
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
321593
321489
-
Ala
TGC
[Ensembl]
¡û
>At0348
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
1705194
1705288
+
Ala
TGC
[Ensembl]
¡û
>At0350
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
118901
118830
-
Ala
CGC
[Ensembl]
¡û
>WENV170574112
FLYM01006892
[FLYM] hot springs metagenome; Sediment
1729
1655
-
Ala
CGC
[ENA]
¢þ
>W1911075110
NMUE01000004
Thermoproteota
Pyrobaculum aerophilum YKB31 [NMUE]
65914
65988
+
Ala
CGC
[ENA]
¡û
>W1911075151
NMUF01000061
Thermoproteota
Pyrobaculum aerophilum YKB32 [NMUF]
56
130
+
Ala
CGC
[ENA]
¡û
>W1610000634
ABIO01000006
Thermoproteota
Pyrobaculum neutrophilum V24Sta [ABIO]
91831
91757
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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