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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.353409 (44 seq.)
>W1711132184
LUVZ01000001
Bacteroidota
Chryseobacterium cucumeris GSE06 [LUVZ]
540529
540603
+
Arg
CCT
[ENA]
¡û
>W131229955
AUHF01000001
Bacteroidota
Christiangramia portivictoriae DSM 23547 [AUHF]
322936
323010
+
Arg
CCT
[ENA]
¡û
>W131229995
AUHG01000010
Bacteroidota
Christiangramia echinicola DSM 19838 [AUHG]
467921
467995
+
Arg
CCT
[ENA]
¡û
>W131236992
AUMT01000004
Bacteroidota
Chryseobacterium daeguense DSM 19388 [AUMT]
161710
161784
+
Arg
CCT
[ENA]
¡û
>C171047811
CP016359
Bacteroidota
Christiangramia flava JLT2011 [CP016359]
1796754
1796826
+
Arg
CCT
-
¡û
>C171074053
CP018153
Bacteroidota
Christiangramia salexigens LPB0144 [CP018153]
2201362
2201288
-
Arg
CCT
-
¡û
>C171083788
CP018786
Bacteroidota
Chryseobacterium indologenes AA5 [CP018786]
2225475
2225401
-
Arg
CCT
-
¡û
>C009882
CU207366
Bacteroidota
Christiangramia forsetii KT0803 [CU207366]
3612688
3612759
+
Arg
CCT
[Ensembl]
¡û
>W141168423
AXUZ01000009
Bacteroidota
Chryseobacterium sp. UNC8MFCol [AXUZ]
91741
91815
+
Arg
CCT
[ENA]
¡û
>WENV170312020
CESM01212336
[CESM] marine metagenome genome assembly TARA_102_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
412
340
-
Arg
CCT
[ENA]
¢þ
>WENV170337723
CETA01151585
[CETA] marine metagenome genome assembly TARA_109_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
695
769
+
Arg
CCT
[ENA]
¢þ
>WENV170404694
CEUG01022070
[CEUG] marine metagenome genome assembly TARA_128_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
962
890
-
Arg
CCT
[ENA]
¢þ
>WENV170468726
CEVF01054866
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1222
1150
-
Arg
CCT
[ENA]
¢þ
>WENV170579577
FUFK010039803
[FUFK] metagenome; unknown
234
306
+
Arg
CCT
[ENA]
¢þ
>WENV170582515
FUFK010082790
[FUFK] metagenome; unknown
535
461
-
Arg
CCT
[ENA]
¢þ
>WENV170592273
FUFK010803582
[FUFK] metagenome; unknown
476
404
-
Arg
CCT
[ENA]
¢þ
>WENV170860622
MDTB01053780
[MDTB] marine metagenome; seawater
2677
2751
+
Arg
CCT
[ENA]
¢þ
>C181056712
CP022058
Bacteroidota
Chryseobacterium indologenes FDAARGOS_337 [CP022058]
1202612
1202540
-
Arg
CCT
-
¡û
>C181061671
CP022282
Bacteroidota
Chryseobacterium sp. T16E-39 [CP022282]
615705
615633
-
Arg
CCT
-
¡û
>C181161948
CP028136
Bacteroidota
Christiangramia fulva SH35 [CP028136]
1070445
1070373
-
Arg
CCT
-
¡û
>C191115352
CP033917
Bacteroidota
Chryseobacterium sp. G0201 [CP033917]
4065406
4065334
-
Arg
CCT
-
¡û
>C191115849
CP033924
Bacteroidota
Chryseobacterium lactis KC_1864 [CP033924]
3769503
3769431
-
Arg
CCT
-
¡û
>C191115955
CP033925
Bacteroidota
Chryseobacterium lactis G0197 [CP033925]
1654620
1654548
-
Arg
CCT
-
¡û
>W141817734
JQKZ01000023
Bacteroidota
Chryseobacterium sp. CF284 [JQKZ]
79628
79702
+
Arg
CCT
[ENA]
¡û
>W141819097
JQMA01000023
Bacteroidota
Chryseobacterium sp. CF299 [JQMA]
1616
1542
-
Arg
CCT
[ENA]
¡û
>W1910184800
BJTC01000001
Bacteroidota
Chryseobacterium sp. ON_d1 [BJTC]
529776
529704
-
Arg
CCT
[ENA]
¡û
>W1910341193
FTPE01000014
Bacteroidota
Chryseobacterium sp. JV274 [FTPE]
953360
953432
+
Arg
CCT
[ENA]
¡û
>W1911586373
PIZV01000002
Bacteroidota
Chryseobacterium sp. PMSZPI [PIZV]
158947
159019
+
Arg
CCT
[ENA]
¡û
>W1911680397
QICI01000003
Bacteroidota
Chryseobacterium sp. CH21 [QICI]
24848
24922
+
Arg
CCT
[ENA]
¡û
>W1911701966
QNVV01000015
Bacteroidota
Chryseobacterium pennipullorum 7_F195 [QNVV]
73355
73281
-
Arg
CCT
[ENA]
¡û
>W1911749785
QWIU01000002
Bacteroidota
Chryseobacterium nematophagum JUb129 [QWIU]
2318279
2318207
-
Arg
CCT
[ENA]
¡û
>W1810234030
PPED02000001
Bacteroidota
Chryseobacterium phosphatilyticum ISE14 [PPED]
287030
286958
-
Arg
CCT
[ENA]
¡û
>W1810234340
PPEH01000011
Bacteroidota
Chryseobacterium lactis NCTC11390 [PPEH]
12245
12317
+
Arg
CCT
[ENA]
¡û
>W1810504125
QBKQ01000001
Bacteroidota
Christiangramia gaetbulicola DSM 23082 [QBKQ]
944827
944755
-
Arg
CCT
[ENA]
¡û
>W1511432457
JUGN01000013
Bacteroidota
Chryseobacterium sp. YR480 [JUGN]
340356
340282
-
Arg
CCT
[ENA]
¡û
>W1511432492
JUGO01000005
Bacteroidota
Chryseobacterium sp. YR485 [JUGO]
340957
340883
-
Arg
CCT
[ENA]
¡û
>W1511432552
JUGP01000001
Bacteroidota
Chryseobacterium sp. YR477 [JUGP]
746469
746543
+
Arg
CCT
[ENA]
¡û
>W1511592753
LBIQ01000030
Bacteroidota
Mangrovimonas sp. ST2L15 [LBIQ]
948121
948195
+
Arg
CCT
[ENA]
¡û
>W121086489
AKJY01000101
Bacteroidota
Chryseobacterium populi CF314 [AKJY]
79351
79425
+
Arg
CCT
[ENA]
¡û
>W1610943257
LUVZ01000001
Bacteroidota
Chryseobacterium cucumeris GSE06 [LUVZ]
540529
540603
+
Arg
CCT
[ENA]
¡û
>W1710010660
AMRU01000001
Bacteroidota
Christiangramia flava JLT2011 [AMRU]
335848
335776
-
Arg
CCT
[ENA]
¡û
>W1710540299
FNWQ01000002
Bacteroidota
Chryseobacterium culicis [FNWQ]
331315
331241
-
Arg
CCT
[ENA]
¡û
>W1710565762
FORL01000005
Bacteroidota
Chryseobacterium indologenes [FORL]
90593
90665
+
Arg
CCT
[ENA]
¡û
>W1710606016
FWXM01000001
Bacteroidota
Chryseobacterium sp. YR221 [FWXM]
798439
798511
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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