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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.353424 (47 seq.)
>W131167572
ARDJ01000019
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
8199
8125
-
Asn
GTT
[ENA]
¡û
>C025821
AE008691
Bacillota
Caldanaerobacter subterraneus subsp. tengcongensis MB4 [AE008691]
58582
58656
+
Asn
GTT
[Ensembl]
¡û
>C025843
AE008691
Bacillota
Caldanaerobacter subterraneus subsp. tengcongensis MB4 [AE008691]
2151787
2151713
-
Asn
GTT
[Ensembl]
¡û
>C025851
AE008691
Bacillota
Caldanaerobacter subterraneus subsp. tengcongensis MB4 [AE008691]
1701516
1701442
-
Asn
GTT
[Ensembl]
¡û
>w018969
AATV01000008
Bacillota
Thermoanaerobacter sp. X514 X514 [AATV]
63196
63120
-
Asn
GTT
[ENA]
¡û
>WENV181226162
OFDK01000126
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
29388
29462
+
Asn
GTT
[ENA]
¢þ
>W141153099
AXDC01000002
Bacillota
Caldanaerobacter subterraneus subsp. yonseiensis KB-1 [AXDC]
130559
130633
+
Asn
GTT
[ENA]
¡û
>W141153138
AXDC01000038
Bacillota
Caldanaerobacter subterraneus subsp. yonseiensis KB-1 [AXDC]
601
675
+
Asn
GTT
[ENA]
¡û
>W141153147
AXDC01000076
Bacillota
Caldanaerobacter subterraneus subsp. yonseiensis KB-1 [AXDC]
246
320
+
Asn
GTT
[ENA]
¡û
>C08010959
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
1353233
1353307
+
Asn
GTT
[Ensembl]
¡û
>C08011045
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
793416
793490
+
Asn
GTT
[Ensembl]
¡û
>WENV170675653
LDZP01000184
[LDZP] terrestrial metagenome; oil reservoir sample I1
21175
21249
+
Asn
GTT
[ENA]
¢þ
>WENV170676223
LDZR01001816
[LDZR] terrestrial metagenome; oil reservoir sample K2
31784
31858
+
Asn
GTT
[ENA]
¢þ
>WENV170676248
LDZR01001867
[LDZR] terrestrial metagenome; oil reservoir sample K2
15
89
+
Asn
GTT
[ENA]
¢þ
>WENV170676879
LDZS01002906
[LDZS] terrestrial metagenome; oil reservoir sample K3
4077
4003
-
Asn
GTT
[ENA]
¢þ
>C191108129
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
2232170
2232096
-
Asn
GTT
-
¡û
>W09112158
ABXP01000185
Bacillota
Caldanaerobacter subterraneus DSM 12653 [ABXP]
4957
5031
+
Asn
GTT
[ENA]
¡û
>W09112164
ABXP01000199
Bacillota
Caldanaerobacter subterraneus DSM 12653 [ABXP]
8552
8478
-
Asn
GTT
[ENA]
¡û
>W09133549
ACPF01000043
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
20998
21072
+
Asn
GTT
[ENA]
¡û
>W09134105
ACQZ01000001
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
61522
61448
-
Asn
GTT
[ENA]
¡û
>W09135077
ACVH01000075
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
4673
4747
+
Asn
GTT
[ENA]
¡û
>W09135155
ACVK01000027
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
9387
9313
-
Asn
GTT
[ENA]
¡û
>W09135884
ACXP01000032
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
24068
24142
+
Asn
GTT
[ENA]
¡û
>W10105916
ACXY01000007
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
14837
14911
+
Asn
GTT
[ENA]
¡û
>C10113405
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
1558746
1558672
-
Asn
GTT
[Ensembl]
¡û
>C10113461
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
1541979
1541905
-
Asn
GTT
[Ensembl]
¡û
>W11108239
ACXY01000007
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
14837
14911
+
Asn
GTT
[ENA]
¡û
>W1511275085
JOOI01000001
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
941057
940983
-
Asn
GTT
[ENA]
¡û
>C11122472
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
785610
785684
+
Asn
GTT
[Ensembl]
¡û
>C11122734
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
1561149
1561075
-
Asn
GTT
[Ensembl]
¡û
>C11123258
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
1680717
1680643
-
Asn
GTT
[Ensembl]
¡û
>W11152654
AEYS01000013
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
40203
40129
-
Asn
GTT
[ENA]
¡û
>W11152693
AEYS01000192
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
151
225
+
Asn
GTT
[ENA]
¡û
>W121068100
AJUD01000009
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
59202
59276
+
Asn
GTT
[ENA]
¡û
>W1610043646
BAZY01000005
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
114460
114534
+
Asn
GTT
[ENA]
¡û
>W1610612285
LGEO01000021
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
21175
21249
+
Asn
GTT
[ENA]
¡û
>W1610612625
LGEY01000008
Bacillota
Caldanaerobacter subterraneus [LGEY]
31784
31858
+
Asn
GTT
[ENA]
¡û
>W1610612650
LGEY01000059
Bacillota
Caldanaerobacter subterraneus [LGEY]
15
89
+
Asn
GTT
[ENA]
¡û
>W1610613175
LGFN01000010
Bacillota
Caldanaerobacter subterraneus [LGFN]
4077
4003
-
Asn
GTT
[ENA]
¡û
>W1710040806
BAZY01000005
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
114460
114534
+
Asn
GTT
[ENA]
¡û
>W1710515327
FNBS01000039
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
14979
15053
+
Asn
GTT
[ENA]
¡û
>W1710560366
FONI01000019
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
14881
14955
+
Asn
GTT
[ENA]
¡û
>W1710583297
FQUR01000010
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
57563
57637
+
Asn
GTT
[ENA]
¡û
>W1710733791
LGEO01000021
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
21175
21249
+
Asn
GTT
[ENA]
¡û
>W1710733946
LGEY01000008
Bacillota
Caldanaerobacter subterraneus [LGEY]
31784
31858
+
Asn
GTT
[ENA]
¡û
>W1710733971
LGEY01000059
Bacillota
Caldanaerobacter subterraneus [LGEY]
15
89
+
Asn
GTT
[ENA]
¡û
>W1710734382
LGFN01000010
Bacillota
Caldanaerobacter subterraneus [LGFN]
4077
4003
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK