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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.353434 (81 seq.)
>W1711090572
LTAV01000011
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
192
117
-
Glu
TTC
[ENA]
¡û
>W1711090582
LTAV01000017
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
192
117
-
Glu
TTC
[ENA]
¡û
>W1711090597
LTAV01000029
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
23474
23399
-
Glu
TTC
[ENA]
¡û
>W1711090598
LTAV01000029
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
23339
23264
-
Glu
TTC
[ENA]
¡û
>W1711090649
LTAW01000005
Gammaproteobacteria
Marinomonas atlantica [LTAW]
421591
421516
-
Glu
TTC
[ENA]
¡û
>W1711090650
LTAW01000005
Gammaproteobacteria
Marinomonas atlantica [LTAW]
421449
421374
-
Glu
TTC
[ENA]
¡û
>W1711090663
LTAW01000007
Gammaproteobacteria
Marinomonas atlantica [LTAW]
256054
256129
+
Glu
TTC
[ENA]
¡û
>W1711090665
LTAW01000007
Gammaproteobacteria
Marinomonas atlantica [LTAW]
256310
256385
+
Glu
TTC
[ENA]
¡û
>WENV180385989
OBPB01014007
[OBPB] marine metagenome; Sterile flask
614
689
+
Glu
TTC
[ENA]
¢þ
>WENV183700689
PDMW01076599
[PDMW] marine metagenome; viruses from water sample; < 0.22 micron filtered, nuclease treated, low buoyant density
3834
3759
-
Glu
TTC
[ENA]
¢þ
>WENV170212941
CEPX01001674
[CEPX] marine metagenome genome assembly TARA_037_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
296
221
-
Glu
TTC
[ENA]
¢þ
>C191039833
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
2092167
2092092
-
Glu
TTC
-
¡û
>C191039835
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
2091908
2091833
-
Glu
TTC
-
¡û
>C191039837
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
2091629
2091554
-
Glu
TTC
-
¡û
>C191039839
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
2091351
2091276
-
Glu
TTC
-
¡û
>C191039841
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
2091073
2090998
-
Glu
TTC
-
¡û
>C191039842
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
2090950
2090875
-
Glu
TTC
-
¡û
>C191039844
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
2090769
2090694
-
Glu
TTC
-
¡û
>W09106442
AAVH01000002
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
83385
83310
-
Glu
TTC
[ENA]
¡û
>W09106444
AAVH01000002
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
83091
83016
-
Glu
TTC
[ENA]
¡û
>W09106446
AAVH01000002
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
82797
82722
-
Glu
TTC
[ENA]
¡û
>W09106447
AAVH01000002
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
82656
82581
-
Glu
TTC
[ENA]
¡û
>W09106449
AAVH01000002
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
82423
82348
-
Glu
TTC
[ENA]
¡û
>W1910584813
JYBL01000002
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
173176
173101
-
Glu
TTC
[ENA]
¡û
>W1910584815
JYBL01000002
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
172905
172830
-
Glu
TTC
[ENA]
¡û
>W1910584817
JYBL01000002
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
172611
172536
-
Glu
TTC
[ENA]
¡û
>W1910584819
JYBL01000002
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
172319
172244
-
Glu
TTC
[ENA]
¡û
>W1910584820
JYBL01000002
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
172177
172102
-
Glu
TTC
[ENA]
¡û
>W1910584822
JYBL01000002
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
171955
171880
-
Glu
TTC
[ENA]
¡û
>W1810606205
QGOK01000003
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
610356
610281
-
Glu
TTC
[ENA]
¡û
>W1810606207
QGOK01000003
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
610088
610013
-
Glu
TTC
[ENA]
¡û
>W1810606209
QGOK01000003
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
609813
609738
-
Glu
TTC
[ENA]
¡û
>W1810606210
QGOK01000003
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
609691
609616
-
Glu
TTC
[ENA]
¡û
>W1810606212
QGOK01000003
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
609459
609384
-
Glu
TTC
[ENA]
¡û
>W1810625241
QHJF01000017
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
202
127
-
Glu
TTC
[ENA]
¡û
>W1810625261
QHJF01000026
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
115
190
+
Glu
TTC
[ENA]
¡û
>W1810625262
QHJF01000026
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
244
319
+
Glu
TTC
[ENA]
¡û
>W1810625264
QHJF01000026
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
477
552
+
Glu
TTC
[ENA]
¡û
>W1810625265
QHJF01000027
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
69
144
+
Glu
TTC
[ENA]
¡û
>W1810676246
QKLW01000001
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
1041177
1041102
-
Glu
TTC
[ENA]
¡û
>W1810676249
QKLW01000001
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
1040723
1040648
-
Glu
TTC
[ENA]
¡û
>W1810676251
QKLW01000001
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
1040444
1040369
-
Glu
TTC
[ENA]
¡û
>W1810676252
QKLW01000001
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
1040321
1040246
-
Glu
TTC
[ENA]
¡û
>W1810676254
QKLW01000001
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
1040140
1040065
-
Glu
TTC
[ENA]
¡û
>W1810720363
QNRF01000012
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
20118
20043
-
Glu
TTC
[ENA]
¡û
>W1810720365
QNRF01000012
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
19881
19806
-
Glu
TTC
[ENA]
¡û
>W1810720367
QNRF01000012
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
19644
19569
-
Glu
TTC
[ENA]
¡û
>W1810720368
QNRF01000012
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
19499
19424
-
Glu
TTC
[ENA]
¡û
>W1810721676
QNSE01000003
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
266613
266538
-
Glu
TTC
[ENA]
¡û
>C11115014
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
1838046
1838121
+
Glu
TTC
[Ensembl]
¡û
>C11115016
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
1838283
1838358
+
Glu
TTC
[Ensembl]
¡û
>C11115018
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
1838520
1838595
+
Glu
TTC
[Ensembl]
¡û
>C11115020
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
1838757
1838832
+
Glu
TTC
[Ensembl]
¡û
>C11115022
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
1838994
1839069
+
Glu
TTC
[Ensembl]
¡û
>C11115023
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
1839137
1839212
+
Glu
TTC
[Ensembl]
¡û
>W1510741318
CYHG01000003
Gammaproteobacteria
Marinomonas fungiae JCM 18476 [CYHG]
444944
444869
-
Glu
TTC
[ENA]
¡û
>W1510741352
CYHG01000014
Gammaproteobacteria
Marinomonas fungiae JCM 18476 [CYHG]
329
254
-
Glu
TTC
[ENA]
¡û
>W1610506672
FLRA01000023
Gammaproteobacteria
Marinomonas gallaica CECT 5115 [FLRA]
278458
278533
+
Glu
TTC
[ENA]
¡û
>W1610506674
FLRA01000023
Gammaproteobacteria
Marinomonas gallaica CECT 5115 [FLRA]
278722
278797
+
Glu
TTC
[ENA]
¡û
>W1610506676
FLRA01000023
Gammaproteobacteria
Marinomonas gallaica CECT 5115 [FLRA]
278952
279027
+
Glu
TTC
[ENA]
¡û
>W1610506678
FLRA01000023
Gammaproteobacteria
Marinomonas gallaica CECT 5115 [FLRA]
279184
279259
+
Glu
TTC
[ENA]
¡û
>W1610506680
FLRA01000023
Gammaproteobacteria
Marinomonas gallaica CECT 5115 [FLRA]
279425
279500
+
Glu
TTC
[ENA]
¡û
>W1610506681
FLRA01000023
Gammaproteobacteria
Marinomonas gallaica CECT 5115 [FLRA]
279564
279639
+
Glu
TTC
[ENA]
¡û
>W1610506733
FLRB01000013
Gammaproteobacteria
Marinomonas gallaica CECT 5116 [FLRB]
279018
279093
+
Glu
TTC
[ENA]
¡û
>W1610506735
FLRB01000013
Gammaproteobacteria
Marinomonas gallaica CECT 5116 [FLRB]
279282
279357
+
Glu
TTC
[ENA]
¡û
>W1610506737
FLRB01000013
Gammaproteobacteria
Marinomonas gallaica CECT 5116 [FLRB]
279512
279587
+
Glu
TTC
[ENA]
¡û
>W1610506739
FLRB01000013
Gammaproteobacteria
Marinomonas gallaica CECT 5116 [FLRB]
279744
279819
+
Glu
TTC
[ENA]
¡û
>W1610506741
FLRB01000013
Gammaproteobacteria
Marinomonas gallaica CECT 5116 [FLRB]
279985
280060
+
Glu
TTC
[ENA]
¡û
>W1610506742
FLRB01000013
Gammaproteobacteria
Marinomonas gallaica CECT 5116 [FLRB]
280124
280199
+
Glu
TTC
[ENA]
¡û
>W1610632883
LIQF01000003
Gammaproteobacteria
Marinomonas fungiae [LIQF]
444944
444869
-
Glu
TTC
[ENA]
¡û
>W1610632917
LIQF01000014
Gammaproteobacteria
Marinomonas fungiae [LIQF]
329
254
-
Glu
TTC
[ENA]
¡û
>W1610924812
LTAV01000011
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
192
117
-
Glu
TTC
[ENA]
¡û
>W1610924822
LTAV01000017
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
192
117
-
Glu
TTC
[ENA]
¡û
>W1610924837
LTAV01000029
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
23474
23399
-
Glu
TTC
[ENA]
¡û
>W1610924838
LTAV01000029
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
23339
23264
-
Glu
TTC
[ENA]
¡û
>W1610924889
LTAW01000005
Gammaproteobacteria
Marinomonas atlantica [LTAW]
421591
421516
-
Glu
TTC
[ENA]
¡û
>W1610924890
LTAW01000005
Gammaproteobacteria
Marinomonas atlantica [LTAW]
421449
421374
-
Glu
TTC
[ENA]
¡û
>W1610924903
LTAW01000007
Gammaproteobacteria
Marinomonas atlantica [LTAW]
256054
256129
+
Glu
TTC
[ENA]
¡û
>W1610924905
LTAW01000007
Gammaproteobacteria
Marinomonas atlantica [LTAW]
256310
256385
+
Glu
TTC
[ENA]
¡û
>W1710767315
LIQF01000003
Gammaproteobacteria
Marinomonas fungiae [LIQF]
444944
444869
-
Glu
TTC
[ENA]
¡û
>W1710767349
LIQF01000014
Gammaproteobacteria
Marinomonas fungiae [LIQF]
329
254
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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