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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.353445 (41 seq.)
>W131059269
ANGH02000163
Gammaproteobacteria
Klebsiella pneumoniae JHCK1 [ANGH]
19384
19458
+
Gly
TCC
[ENA]
¡û
>W1711710221
MSZJ01000006
Gammaproteobacteria
Klebsiella pneumoniae [MSZJ]
297334
297408
+
Gly
TCC
[ENA]
¡û
>W1712052593
NFWQ01000094
Gammaproteobacteria
Klebsiella quasipneumoniae subsp. similipneumoniae [NFWQ]
15931
15857
-
Gly
TCC
[ENA]
¡û
>W1712053104
NFWY01000103
Gammaproteobacteria
Klebsiella quasipneumoniae subsp. similipneumoniae [NFWY]
15931
15857
-
Gly
TCC
[ENA]
¡û
>W1712053248
NFXB01000001
Gammaproteobacteria
Klebsiella quasipneumoniae subsp. similipneumoniae [NFXB]
15931
15857
-
Gly
TCC
[ENA]
¡û
>W1712053401
NFXD01000050
Gammaproteobacteria
Klebsiella quasipneumoniae subsp. similipneumoniae [NFXD]
440674
440748
+
Gly
TCC
[ENA]
¡û
>W1712053498
NFXE01000092
Gammaproteobacteria
Klebsiella quasipneumoniae subsp. similipneumoniae [NFXE]
240770
240844
+
Gly
TCC
[ENA]
¡û
>WENV181601157
OGLE01008379
[OGLE] metagenome; Human gut stool
650
576
-
Gly
TCC
[ENA]
¢þ
>WENV181807887
OGSQ01000642
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
8426
8352
-
Gly
TCC
[ENA]
¢þ
>WENV181817425
OGTN01000028
[OGTN] human gut metagenome; fecal sample 5 from infant 4
26911
26837
-
Gly
TCC
[ENA]
¢þ
>WENV181818461
OGTS01003057
[OGTS] human gut metagenome; fecal sample 4 from infant 4
373
447
+
Gly
TCC
[ENA]
¢þ
>WENV181818957
OGTU01000778
[OGTU] human gut metagenome; fecal sample 6 from infant 4
996
1070
+
Gly
TCC
[ENA]
¢þ
>W141262321
CCBO010000009
Gammaproteobacteria
Klebsiella pneumoniae [CCBO]
26565
26491
-
Gly
TCC
[ENA]
¡û
>WENV182818352
OJZS01000060
[OJZS] human gut metagenome; human gut
36060
36134
+
Gly
TCC
[ENA]
¢þ
>WENV182937805
OKVD01000007
[OKVD] human gut metagenome; human gut
24792
24718
-
Gly
TCC
[ENA]
¢þ
>WENV182950164
OKVR01000277
[OKVR] human gut metagenome; human gut
11742
11668
-
Gly
TCC
[ENA]
¢þ
>WENV182951914
OKVV01000382
[OKVV] human gut metagenome; human gut
24742
24668
-
Gly
TCC
[ENA]
¢þ
>C181133507
CP026399
Gammaproteobacteria
Escherichia coli ECONIH4 [CP026399]
932353
932279
-
Gly
TCC
-
¡û
>C191119947
CP034129
Gammaproteobacteria
Klebsiella quasipneumoniae G4584 [CP034129]
3650710
3650636
-
Gly
TCC
-
¡û
>C191119949
CP034129
Gammaproteobacteria
Klebsiella quasipneumoniae G4584 [CP034129]
2974178
2974104
-
Gly
TCC
-
¡û
>C191120031
CP034136
Gammaproteobacteria
Klebsiella quasipneumoniae subsp. similipneumoniae G747 [CP034136]
3599509
3599435
-
Gly
TCC
-
¡û
>C191120033
CP034136
Gammaproteobacteria
Klebsiella quasipneumoniae subsp. similipneumoniae G747 [CP034136]
2923210
2923136
-
Gly
TCC
-
¡û
>W1910153530
BILI01000003
Gammaproteobacteria
Klebsiella pneumoniae TUM14135 [BILI]
148003
147929
-
Gly
TCC
[ENA]
¡û
>W1910861543
NCMA01000041
Gammaproteobacteria
Klebsiella pneumoniae COL-Kpn21 [NCMA]
27045
26971
-
Gly
TCC
[ENA]
¡û
>W1910862361
NCMM01000009
Gammaproteobacteria
Klebsiella pneumoniae COL-Kpn33 [NCMM]
27045
26971
-
Gly
TCC
[ENA]
¡û
>W1910862489
NCMN01000057
Gammaproteobacteria
Klebsiella pneumoniae COL-Kpn34 [NCMN]
27587
27513
-
Gly
TCC
[ENA]
¡û
>W1910862526
NCMO01000010
Gammaproteobacteria
Klebsiella pneumoniae COL-Kpn35 [NCMO]
12448
12522
+
Gly
TCC
[ENA]
¡û
>W1910862961
NCMU01000003
Gammaproteobacteria
Klebsiella pneumoniae COL-Kpn41 [NCMU]
598634
598560
-
Gly
TCC
[ENA]
¡û
>W1910864175
NCNK01000053
Gammaproteobacteria
Klebsiella pneumoniae COL-Kpn58 [NCNK]
163688
163762
+
Gly
TCC
[ENA]
¡û
>W1910864197
NCNL01000006
Gammaproteobacteria
Klebsiella pneumoniae COL-Kpn59 [NCNL]
192792
192866
+
Gly
TCC
[ENA]
¡û
>W1910864446
NCNO01000008
Gammaproteobacteria
Klebsiella pneumoniae COL-Kpn62 [NCNO]
12448
12522
+
Gly
TCC
[ENA]
¡û
>W1910867934
NCPK01000012
Gammaproteobacteria
Klebsiella pneumoniae COL-Kpn110 [NCPK]
192792
192866
+
Gly
TCC
[ENA]
¡û
>W1911171650
NQEK01000014
Gammaproteobacteria
Klebsiella quasipneumoniae subsp. similipneumoniae KPPSTH03 [NQEK]
24986
24912
-
Gly
TCC
[ENA]
¡û
>W1911761065
QWWB01000010
Gammaproteobacteria
Klebsiella pneumoniae KpPD [QWWB]
22917
22843
-
Gly
TCC
[ENA]
¡û
>W1810640930
QIXU01000002
Gammaproteobacteria
Klebsiella variicola WUSM_KV_28 [QIXU]
35320
35246
-
Gly
TCC
[ENA]
¡û
>W1511670576
LEYP01000009
Gammaproteobacteria
Klebsiella pneumoniae CHS201 [LEYP]
1021262
1021188
-
Gly
TCC
[ENA]
¡û
>W1610488597
FLDI01000031
Gammaproteobacteria
Klebsiella variicola pneumoniae [FLDI]
4468
4542
+
Gly
TCC
[ENA]
¡û
>W1610491124
FLER01000020
Gammaproteobacteria
Klebsiella variicola pneumoniae [FLER]
26504
26430
-
Gly
TCC
[ENA]
¡û
>W1610509114
FLVQ01000010
Gammaproteobacteria
Klebsiella pneumoniae W2-1-ERG2 [FLVQ]
158300
158226
-
Gly
TCC
[ENA]
¡û
>W1710482067
FLDI01000031
Gammaproteobacteria
Klebsiella variicola pneumoniae [FLDI]
4468
4542
+
Gly
TCC
[ENA]
¡û
>W1710484594
FLER01000020
Gammaproteobacteria
Klebsiella variicola pneumoniae [FLER]
26504
26430
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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