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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.353664 (18 seq.)
>WENV183727362
PJTO01034099
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
149
77
-
Lys
TTT
[ENA]
¡û
>WENV183728155
PJTP01050245
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
178
106
-
Lys
TTT
[ENA]
¡û
>WENV183737304
PJUD01003245
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
1240
1168
-
Lys
TTT
[ENA]
¡û
>WENV183737789
PJUD01033867
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
2
74
+
Lys
TTT
[ENA]
¡û
>WENV183737826
PJUD01037629
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
496
424
-
Lys
TTT
[ENA]
¡û
>WENV183738013
PJUD01067149
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
12
84
+
Lys
TTT
[ENA]
¡û
>WENV183738014
PJUD01067149
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
283
355
+
Lys
TTT
[ENA]
¡û
>WENV183738015
PJUD01067149
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
570
642
+
Lys
TTT
[ENA]
¡û
>WENV183738213
PJUD01124573
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
21
93
+
Lys
TTT
[ENA]
¡û
>WENV183738214
PJUD01124573
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
421
493
+
Lys
TTT
[ENA]
¡û
>WENV183738220
PJUD01125539
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
320
392
+
Lys
TTT
[ENA]
¡û
>WENV183738235
PJUD01130071
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
82
10
-
Lys
TTT
[ENA]
¡û
>WENV183738287
PJUD01150206
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
334
406
+
Lys
TTT
[ENA]
¡û
>WENV183738349
PJUD01172130
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
352
280
-
Lys
TTT
[ENA]
¡û
>WENV183738350
PJUD01172288
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
353
281
-
Lys
TTT
[ENA]
¡û
>WENV183738387
PJUD01185331
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
108
180
+
Lys
TTT
[ENA]
¡û
>WENV183738424
PJUD01199931
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
220
292
+
Lys
TTT
[ENA]
¡û
>WENV183739650
PJUE01049702
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
114
186
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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