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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.353664 (29 seq.)
>C171046710
CP016269
Bacteroidota
Flavobacteriaceae bacterium UJ101 [CP016269]
1906121
1906196
+
Gly
TCC
-
¡û
>C171046723
CP016269
Bacteroidota
Flavobacteriaceae bacterium UJ101 [CP016269]
2047610
2047535
-
Gly
TCC
-
¡û
>WENV183727107
PJTO01004961
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
359
432
+
Gly
TCC
[ENA]
¢þ
>WENV183727191
PJTO01011517
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
905
832
-
Gly
TCC
[ENA]
¢þ
>WENV183728665
PJTQ01000257
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
18244
18171
-
Gly
TCC
[ENA]
¢þ
>WENV183728709
PJTQ01000302
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
14773
14846
+
Gly
TCC
[ENA]
¢þ
>WENV183737771
PJUD01031667
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
771
698
-
Gly
TCC
[ENA]
¢þ
>WENV183740213
PJUF01000726
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
4146
4073
-
Gly
TCC
[ENA]
¢þ
>WENV183740233
PJUF01000803
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
11556
11483
-
Gly
TCC
[ENA]
¢þ
>WENV170654525
JRYL01000199
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
10224
10149
-
Gly
TCC
[ENA]
¢þ
>WENV170654584
JRYL01001056
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
19948
20023
+
Gly
TCC
[ENA]
¢þ
>WENV170722728
LSQX01241045
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
45418
45493
+
Gly
TCC
[ENA]
¢þ
>C191134781
CP035107
Bacteroidota
Ornithobacterium rhinotracheale FARPER-174b [CP035107]
1877595
1877522
-
Gly
TCC
-
¡û
>C191134786
CP035107
Bacteroidota
Ornithobacterium rhinotracheale FARPER-174b [CP035107]
1498020
1497947
-
Gly
TCC
-
¡û
>C151013044
CP006828
Bacteroidota
Ornithobacterium rhinotracheale ORT-UMN 88 [CP006828]
1515721
1515796
+
Gly
TCC
[Ensembl]
¡û
>C151013049
CP006828
Bacteroidota
Ornithobacterium rhinotracheale ORT-UMN 88 [CP006828]
1966309
1966384
+
Gly
TCC
[Ensembl]
¡û
>W1511391131
JSYQ01000002
Bacteroidota
Empedobacter falsenii 282 [JSYQ]
211473
211548
+
Gly
TCC
[ENA]
¡û
>C121010271
CP003283
Bacteroidota
Ornithobacterium rhinotracheale DSM 15997 [CP003283]
1564080
1564155
+
Gly
TCC
[Ensembl]
¡û
>C121010276
CP003283
Bacteroidota
Ornithobacterium rhinotracheale DSM 15997 [CP003283]
2014606
2014681
+
Gly
TCC
[Ensembl]
¡û
>W1610029740
AXDE01000005
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
277090
277165
+
Gly
TCC
[ENA]
¡û
>W1610029750
AXDE01000007
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
345402
345477
+
Gly
TCC
[ENA]
¡û
>W1610503154
FLMR01000009
Bacteroidota
Vaginella massiliensis Marseille-P2517 [FLMR]
664046
664121
+
Gly
TCC
[ENA]
¡û
>W1610503161
FLMR01000009
Bacteroidota
Vaginella massiliensis Marseille-P2517 [FLMR]
807993
807920
-
Gly
TCC
[ENA]
¡û
>W1610503163
FLMR01000009
Bacteroidota
Vaginella massiliensis Marseille-P2517 [FLMR]
807552
807479
-
Gly
TCC
[ENA]
¡û
>W1710027110
AXDE01000005
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
277090
277165
+
Gly
TCC
[ENA]
¡û
>W1710027120
AXDE01000007
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
345402
345477
+
Gly
TCC
[ENA]
¡û
>W1710496388
FLMR01000009
Bacteroidota
Vaginella massiliensis Marseille-P2517 [FLMR]
664046
664121
+
Gly
TCC
[ENA]
¡û
>W1710496395
FLMR01000009
Bacteroidota
Vaginella massiliensis Marseille-P2517 [FLMR]
807993
807920
-
Gly
TCC
[ENA]
¡û
>W1710496397
FLMR01000009
Bacteroidota
Vaginella massiliensis Marseille-P2517 [FLMR]
807552
807479
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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