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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.353847 (48 seq.)
>C171131139
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
2814080
2814006
-
Arg
CCT
-
¡û
>W131195013
ASRV01000150
Bacillota
Clostridium sartagoforme AAU1 [ASRV]
49668
49594
-
Arg
CCT
[ENA]
¡û
>W131252532
CBML010000008
Bacillota
Clostridium chauvoei JF4335 [CBML]
19311
19237
-
Arg
CCT
[ENA]
¡û
>WENV180180663
OAWL01000339
[OAWL] human gut metagenome; faeces
4809
4883
+
Arg
CCT
[ENA]
¢þ
>WENV180415527
OBVE01002599
[OBVE] human gut metagenome; faeces
225
151
-
Arg
CCT
[ENA]
¢þ
>WENV180422066
OBVS01000131
[OBVS] human gut metagenome; faeces
12228
12302
+
Arg
CCT
[ENA]
¢þ
>WENV180488916
OBZR01002540
[OBZR] human gut metagenome; faeces
3948
4022
+
Arg
CCT
[ENA]
¢þ
>WENV180761983
ODHZ01044932
[ODHZ] human metagenome; G_DNA_Stool
866
940
+
Arg
CCT
[ENA]
¢þ
>W141083151
AUPH01002926
Bacillota
Clostridium beijerinckii AAU1 [AUPH]
406
332
-
Arg
CCT
[ENA]
¡û
>WENV181426136
OGCQ01002960
[OGCQ] human gut metagenome; human gut
14215
14141
-
Arg
CCT
[ENA]
¢þ
>WENV181805162
OGSH01001064
[OGSH] human gut metagenome; fecal sample 5 from infant 6
333
259
-
Arg
CCT
[ENA]
¢þ
>WENV181805918
OGSJ01001558
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
4783
4857
+
Arg
CCT
[ENA]
¢þ
>WENV181807789
OGSQ01000141
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
41298
41372
+
Arg
CCT
[ENA]
¢þ
>WENV181807813
OGSQ01000245
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
594
520
-
Arg
CCT
[ENA]
¢þ
>WENV181809481
OGST01000280
[OGST] human gut metagenome; fecal sample 7 from infant 6
33399
33325
-
Arg
CCT
[ENA]
¢þ
>WENV181814859
OGTH01000687
[OGTH] human gut metagenome; fecal sample 4 from infant 6
242
168
-
Arg
CCT
[ENA]
¢þ
>WENV181817603
OGTN01001384
[OGTN] human gut metagenome; fecal sample 5 from infant 4
3619
3693
+
Arg
CCT
[ENA]
¢þ
>WENV181819046
OGTU01009880
[OGTU] human gut metagenome; fecal sample 6 from infant 4
557
483
-
Arg
CCT
[ENA]
¢þ
>WENV182405935
OIEX01000020
[OIEX] human gut metagenome; fecal sample from infant N3_177 DOL 45
74433
74359
-
Arg
CCT
[ENA]
¢þ
>WENV182613785
OJKA01013322
[OJKA] metagenome; faeces
293
219
-
Arg
CCT
[ENA]
¢þ
>WENV182799836
OJTW01001363
[OJTW] human gut metagenome; human gut
58
132
+
Arg
CCT
[ENA]
¢þ
>WENV182807215
OJVV01002480
[OJVV] human gut metagenome; human gut
376
450
+
Arg
CCT
[ENA]
¢þ
>WENV182813190
OJXZ01004263
[OJXZ] human gut metagenome; human gut
23
97
+
Arg
CCT
[ENA]
¢þ
>WENV182828047
OKDE01005707
[OKDE] human gut metagenome; human gut
72
146
+
Arg
CCT
[ENA]
¢þ
>WENV182832959
OKEP01002900
[OKEP] human gut metagenome; human gut
1162
1088
-
Arg
CCT
[ENA]
¢þ
>WENV182838176
OKGO01001309
[OKGO] human gut metagenome; human gut
1983
1909
-
Arg
CCT
[ENA]
¢þ
>WENV182838444
OKGS01000790
[OKGS] human gut metagenome; human gut
664
738
+
Arg
CCT
[ENA]
¢þ
>WENV182843230
OKIK01007520
[OKIK] human gut metagenome; human gut
607
533
-
Arg
CCT
[ENA]
¢þ
>WENV182844349
OKIR01002730
[OKIR] human gut metagenome; human gut
1105
1031
-
Arg
CCT
[ENA]
¢þ
>WENV182850922
OKLH01002653
[OKLH] human gut metagenome; human gut
269
343
+
Arg
CCT
[ENA]
¢þ
>WENV182862844
OKPP01007114
[OKPP] human gut metagenome; human gut
22
96
+
Arg
CCT
[ENA]
¢þ
>WENV182863544
OKPT01002216
[OKPT] human gut metagenome; human gut
647
721
+
Arg
CCT
[ENA]
¢þ
>WENV182963342
OKWQ01000129
[OKWQ] human gut metagenome; stool
24215
24289
+
Arg
CCT
[ENA]
¢þ
>C181031776
CP018624
Bacillota
Clostridium chauvoei DSM 7528 [CP018624]
2798885
2798811
-
Arg
CCT
-
¡û
>C181031992
CP018630
Bacillota
Clostridium chauvoei 12S0467 [CP018630]
2811847
2811773
-
Arg
CCT
-
¡û
>C191012403
CP016786
Bacillota
Clostridium isatidis DSM 15098 [CP016786]
2791899
2791825
-
Arg
CCT
-
¡û
>C191025665
CP023671
Bacillota
Clostridium septicum DSM 7534 [CP023671]
1625682
1625608
-
Arg
CCT
-
¡û
>C191051255
CP027286
Bacillota
Clostridium chauvoei SBP 07/09 [CP027286]
2810330
2810256
-
Arg
CCT
-
¡û
>C191123852
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
408978
408904
-
Arg
CCT
-
¡û
>W09118980
ACDK01000106
Bacillota
Clostridium sp. 7_2_43FAA [ACDK]
12158
12232
+
Arg
CCT
[ENA]
¡û
>W1911491443
OAOE01000039
Bacillota
Clostridium tertium [OAOE]
12417
12491
+
Arg
CCT
[ENA]
¡û
>W1911493955
OBJV01000012
Bacillota
Clostridium tertium [OBJV]
91466
91540
+
Arg
CCT
[ENA]
¡û
>W1810604936
QGMU01000011
Bacillota
Clostridium tertium Gcol.A43 [QGMU]
32536
32462
-
Arg
CCT
[ENA]
¡û
>W1810605021
QGMV01000012
Bacillota
Clostridium tertium Gcol.A2 [QGMV]
32539
32465
-
Arg
CCT
[ENA]
¡û
>W1511595475
LBMX01000092
Bacillota
Clostridium sp. C8 [LBMX]
39926
39852
-
Arg
CCT
[ENA]
¡û
>W1610507714
FLTT01000002
Bacillota
Clostridium septicum [FLTT]
44511
44437
-
Arg
CCT
[ENA]
¡û
>W1710499932
FLTT01000002
Bacillota
Clostridium septicum [FLTT]
44511
44437
-
Arg
CCT
[ENA]
¡û
>W1710588085
FQZB01000018
Bacillota
Clostridium cavendishii DSM 21758 [FQZB]
36905
36979
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK