This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.353848 (95 seq.)
>W1711088616
LSZB01000276
Bacillota
Clostridium haemolyticum [LSZB]
123
197
+
Asn
GTT
[ENA]
¡û
>W1711088641
LSZB01000357
Bacillota
Clostridium haemolyticum [LSZB]
7839
7913
+
Asn
GTT
[ENA]
¡û
>C171077660
CP018335
Bacillota
Clostridium kluyveri JZZ [CP018335]
260905
260979
+
Asn
GTT
-
¡û
>C171077670
CP018335
Bacillota
Clostridium kluyveri JZZ [CP018335]
1220571
1220645
+
Asn
GTT
-
¡û
>C171131168
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
2498958
2498884
-
Asn
GTT
-
¡û
>W131044183
AMQH01000024
Bacillota
Clostridium tunisiense TJ [AMQH]
29373
29299
-
Asn
GTT
[ENA]
¡û
>W131044184
AMQH01000024
Bacillota
Clostridium tunisiense TJ [AMQH]
29153
29079
-
Asn
GTT
[ENA]
¡û
>W131044185
AMQH01000024
Bacillota
Clostridium tunisiense TJ [AMQH]
28933
28859
-
Asn
GTT
[ENA]
¡û
>W131044187
AMQH01000025
Bacillota
Clostridium tunisiense TJ [AMQH]
25353
25279
-
Asn
GTT
[ENA]
¡û
>W131195037
ASRV01000213
Bacillota
Clostridium sartagoforme AAU1 [ASRV]
48078
48004
-
Asn
GTT
[ENA]
¡û
>W131252506
CBML010000006
Bacillota
Clostridium chauvoei JF4335 [CBML]
2181416
2181342
-
Asn
GTT
[ENA]
¡û
>WENV180180629
OAWL01000094
[OAWL] human gut metagenome; faeces
95
169
+
Asn
GTT
[ENA]
¢þ
>WENV180415549
OBVE01004215
[OBVE] human gut metagenome; faeces
441
515
+
Asn
GTT
[ENA]
¢þ
>WENV180421957
OBVS01000020
[OBVS] human gut metagenome; faeces
227161
227235
+
Asn
GTT
[ENA]
¢þ
>WENV180421958
OBVS01000020
[OBVS] human gut metagenome; faeces
227267
227341
+
Asn
GTT
[ENA]
¢þ
>WENV180422048
OBVS01000107
[OBVS] human gut metagenome; faeces
86
160
+
Asn
GTT
[ENA]
¢þ
>WENV180468493
OBYJ01042032
[OBYJ] human gut metagenome; faeces
150
76
-
Asn
GTT
[ENA]
¢þ
>WENV180477460
OBYZ01000898
[OBYZ] human gut metagenome; faeces
13472
13546
+
Asn
GTT
[ENA]
¢þ
>WENV180488946
OBZR01003098
[OBZR] human gut metagenome; faeces
86
160
+
Asn
GTT
[ENA]
¢þ
>W141063582
APJA01000036
Bacillota
Clostridium intestinale URNW [APJA]
5271
5197
-
Asn
GTT
[ENA]
¡û
>WENV180760599
ODHZ01001337
[ODHZ] human metagenome; G_DNA_Stool
26511
26585
+
Asn
GTT
[ENA]
¢þ
>WENV180761267
ODHZ01007402
[ODHZ] human metagenome; G_DNA_Stool
4961
4887
-
Asn
GTT
[ENA]
¢þ
>WENV180761740
ODHZ01023199
[ODHZ] human metagenome; G_DNA_Stool
1558
1484
-
Asn
GTT
[ENA]
¢þ
>W141082967
AUPA01000110
Bacillota
Clostridium sp. BL8 [AUPA]
272
346
+
Asn
GTT
[ENA]
¡û
>W141082998
AUPA01000238
Bacillota
Clostridium sp. BL8 [AUPA]
152
226
+
Asn
GTT
[ENA]
¡û
>WENV180941372
ODTZ01004366
[ODTZ] human metagenome; G_DNA_Stool
3711
3637
-
Asn
GTT
[ENA]
¢þ
>WENV181580350
OGJZ01043704
[OGJZ] metagenome; Human gut stool
418
344
-
His
GTG
[ENA]
¢þ
>WENV181740659
OGQJ01013359
[OGQJ] human gut metagenome; faeces
1086
1012
-
Asn
GTT
[ENA]
¢þ
>WENV181805137
OGSH01000888
[OGSH] human gut metagenome; fecal sample 5 from infant 6
99
173
+
Asn
GTT
[ENA]
¢þ
>WENV181805776
OGSJ01000481
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
99
173
+
Asn
GTT
[ENA]
¢þ
>WENV181805844
OGSJ01000806
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
13100
13174
+
Asn
GTT
[ENA]
¢þ
>WENV181807876
OGSQ01000500
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
13149
13223
+
Asn
GTT
[ENA]
¢þ
>WENV181809517
OGST01000395
[OGST] human gut metagenome; fecal sample 7 from infant 6
99
173
+
Asn
GTT
[ENA]
¢þ
>WENV181814771
OGTH01000244
[OGTH] human gut metagenome; fecal sample 4 from infant 6
301
375
+
Asn
GTT
[ENA]
¢þ
>WENV181814833
OGTH01000410
[OGTH] human gut metagenome; fecal sample 4 from infant 6
13455
13529
+
Asn
GTT
[ENA]
¢þ
>WENV181817539
OGTN01000450
[OGTN] human gut metagenome; fecal sample 5 from infant 4
13489
13563
+
Asn
GTT
[ENA]
¢þ
>WENV181817550
OGTN01000606
[OGTN] human gut metagenome; fecal sample 5 from infant 4
71
145
+
Asn
GTT
[ENA]
¢þ
>WENV181818924
OGTU01000299
[OGTU] human gut metagenome; fecal sample 6 from infant 4
98
172
+
Asn
GTT
[ENA]
¢þ
>WENV181826124
OGUL01005792
[OGUL] human gut metagenome; faeces
2261
2335
+
Asn
GTT
[ENA]
¢þ
>WENV182405910
OIEX01000009
[OIEX] human gut metagenome; fecal sample from infant N3_177 DOL 45
213026
213100
+
Asn
GTT
[ENA]
¢þ
>WENV182838192
OKGO01001622
[OKGO] human gut metagenome; human gut
1968
1894
-
Asn
GTT
[ENA]
¢þ
>WENV182850902
OKLH01000260
[OKLH] human gut metagenome; human gut
2391
2465
+
Asn
GTT
[ENA]
¢þ
>WENV182961397
OKWK01004838
[OKWK] human gut metagenome; stool
845
771
-
Asn
GTT
[ENA]
¢þ
>WENV182963369
OKWQ01000160
[OKWQ] human gut metagenome; stool
44646
44572
-
Asn
GTT
[ENA]
¢þ
>WENV183112647
OLNP01001333
[OLNP] human gut metagenome; faeces
17594
17668
+
Asn
GTT
[ENA]
¢þ
>W141427651
JENN01000065
Bacillota
Clostridium novyi A str. GD211209 [JENN]
3850
3776
-
Asn
GTT
[ENA]
¡û
>W141427827
JENQ01000017
Bacillota
Clostridium botulinum C/D str. Sp77 [JENQ]
3696
3622
-
Asn
GTT
[ENA]
¡û
>W141427875
JENQ01000140
Bacillota
Clostridium botulinum C/D str. Sp77 [JENQ]
297
371
+
Asn
GTT
[ENA]
¡û
>C181031747
CP018624
Bacillota
Clostridium chauvoei DSM 7528 [CP018624]
125998
126072
+
Asn
GTT
-
¡û
>C181032019
CP018630
Bacillota
Clostridium chauvoei 12S0467 [CP018630]
2696106
2696032
-
Asn
GTT
-
¡û
>C191012375
CP016786
Bacillota
Clostridium isatidis DSM 15098 [CP016786]
192310
192384
+
Asn
GTT
-
¡û
>C191025635
CP023671
Bacillota
Clostridium septicum DSM 7534 [CP023671]
2168430
2168504
+
Asn
GTT
-
¡û
>C191037304
CP025746
Bacillota
Clostridium manihotivorum CT4 [CP025746]
1385433
1385507
+
Asn
GTT
-
¡û
>C191051284
CP027286
Bacillota
Clostridium chauvoei SBP 07/09 [CP027286]
2495207
2495133
-
Asn
GTT
-
¡û
>C191123826
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
965038
965112
+
Asn
GTT
-
¡û
>W09118961
ACDK01000081
Bacillota
Clostridium sp. 7_2_43FAA [ACDK]
52709
52635
-
Asn
GTT
[ENA]
¡û
>W09118969
ACDK01000090
Bacillota
Clostridium sp. 7_2_43FAA [ACDK]
13396
13470
+
Asn
GTT
[ENA]
¡û
>W09118970
ACDK01000090
Bacillota
Clostridium sp. 7_2_43FAA [ACDK]
13502
13576
+
Asn
GTT
[ENA]
¡û
>W1911491422
OAOE01000024
Bacillota
Clostridium tertium [OAOE]
159
233
+
Asn
GTT
[ENA]
¡û
>W1911491449
OAOE01000044
Bacillota
Clostridium tertium [OAOE]
5576
5502
-
Asn
GTT
[ENA]
¡û
>W1911491450
OAOE01000044
Bacillota
Clostridium tertium [OAOE]
5470
5396
-
Asn
GTT
[ENA]
¡û
>W1911493914
OBJV01000002
Bacillota
Clostridium tertium [OBJV]
530424
530350
-
Asn
GTT
[ENA]
¡û
>W1911493939
OBJV01000006
Bacillota
Clostridium tertium [OBJV]
5589
5515
-
Asn
GTT
[ENA]
¡û
>W1911493940
OBJV01000006
Bacillota
Clostridium tertium [OBJV]
5483
5409
-
Asn
GTT
[ENA]
¡û
>W1810604922
QGMU01000008
Bacillota
Clostridium tertium Gcol.A43 [QGMU]
5685
5611
-
Asn
GTT
[ENA]
¡û
>W1810604923
QGMU01000008
Bacillota
Clostridium tertium Gcol.A43 [QGMU]
5579
5505
-
Asn
GTT
[ENA]
¡û
>W1810604952
QGMU01000019
Bacillota
Clostridium tertium Gcol.A43 [QGMU]
358
432
+
Asn
GTT
[ENA]
¡û
>W1810605012
QGMV01000011
Bacillota
Clostridium tertium Gcol.A2 [QGMV]
5668
5594
-
Asn
GTT
[ENA]
¡û
>W1810605013
QGMV01000011
Bacillota
Clostridium tertium Gcol.A2 [QGMV]
5562
5488
-
Asn
GTT
[ENA]
¡û
>W1810605044
QGMV01000020
Bacillota
Clostridium tertium Gcol.A2 [QGMV]
390
464
+
Asn
GTT
[ENA]
¡û
>C151036016
CP008713
Bacillota
Candidatus Arthromitus sp. SFB-mouse-NL [CP008713]
304830
304904
+
Asn
GTT
[Ensembl]
¡û
>W1510882214
JDRY01000065
Bacillota
Clostridium botulinum C/D str. DC5 [JDRY]
6765
6691
-
Asn
GTT
[ENA]
¡û
>W1510882226
JDRY01000087
Bacillota
Clostridium botulinum C/D str. DC5 [JDRY]
75452
75526
+
Asn
GTT
[ENA]
¡û
>W1510882262
JDRZ01000020
Bacillota
Clostridium botulinum D str. CCUG 7971 [JDRZ]
50240
50314
+
Asn
GTT
[ENA]
¡û
>W1510882277
JDRZ01000063
Bacillota
Clostridium botulinum D str. CCUG 7971 [JDRZ]
4030
3956
-
Asn
GTT
[ENA]
¡û
>W1510882319
JDSA01000022
Bacillota
Clostridium haemolyticum NCTC 8350 [JDSA]
4129
4055
-
Asn
GTT
[ENA]
¡û
>W1510882343
JDSA01000076
Bacillota
Clostridium haemolyticum NCTC 8350 [JDSA]
262
336
+
Asn
GTT
[ENA]
¡û
>W1511595439
LBMX01000005
Bacillota
Clostridium sp. C8 [LBMX]
138852
138926
+
Asn
GTT
[ENA]
¡û
>W1511595457
LBMX01000015
Bacillota
Clostridium sp. C8 [LBMX]
119
193
+
Asn
GTT
[ENA]
¡û
>W1610501258
FLKB01000008
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
255217
255291
+
Asn
GTT
[ENA]
¡û
>W1610501259
FLKB01000008
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
255321
255395
+
Asn
GTT
[ENA]
¡û
>W1610501283
FLKB01000017
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
62039
61965
-
Asn
GTT
[ENA]
¡û
>W1610507736
FLTT01000017
Bacillota
Clostridium septicum [FLTT]
232
306
+
Asn
GTT
[ENA]
¡û
>W1710494728
FLKB01000008
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
255217
255291
+
Asn
GTT
[ENA]
¡û
>W1710494729
FLKB01000008
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
255321
255395
+
Asn
GTT
[ENA]
¡û
>W1710494753
FLKB01000017
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
62039
61965
-
Asn
GTT
[ENA]
¡û
>W1710499954
FLTT01000017
Bacillota
Clostridium septicum [FLTT]
232
306
+
Asn
GTT
[ENA]
¡û
>W1710586755
FQXL01000029
Bacillota
Clostridium magnum DSM 2767 [FQXL]
92474
92400
-
Asn
GTT
[ENA]
¡û
>W1710586756
FQXL01000033
Bacillota
Clostridium magnum DSM 2767 [FQXL]
14
88
+
Asn
GTT
[ENA]
¡û
>W1710586791
FQXL01000062
Bacillota
Clostridium magnum DSM 2767 [FQXL]
19338
19264
-
Asn
GTT
[ENA]
¡û
>W1710586795
FQXL01000063
Bacillota
Clostridium magnum DSM 2767 [FQXL]
3972
3898
-
Asn
GTT
[ENA]
¡û
>W1710586802
FQXL01000086
Bacillota
Clostridium magnum DSM 2767 [FQXL]
5794
5720
-
Asn
GTT
[ENA]
¡û
>W1710586839
FQXM01000041
Bacillota
Clostridium grantii DSM 8605 [FQXM]
4553
4479
-
Asn
GTT
[ENA]
¡û
>W1710587154
FQXU01000008
Bacillota
Clostridium intestinale DSM 6191 [FQXU]
240243
240169
-
Asn
GTT
[ENA]
¡û
>W1710588089
FQZB01000022
Bacillota
Clostridium cavendishii DSM 21758 [FQZB]
76967
76893
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK