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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.354464 (12 seq.)
>W1711388708
MEIA01000263
Actinomycetota
Couchioplanes caeruleus subsp. caeruleus [MEIA]
5138
5212
+
Val
GAC
[ENA]
¡û
>WENV180101117
OAOU01000734
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
4461
4387
-
Val
GAC
[ENA]
¢þ
>WENV180292147
OBIV01328631
[OBIV] soil metagenome; Clay
242
168
-
Val
GAC
[ENA]
¢þ
>C191007441
AP019371
Actinomycetota
Actinoplanes sp. OR16 [AP019371]
843497
843425
-
Val
GAC
-
¡û
>C191007444
AP019371
Actinomycetota
Actinoplanes sp. OR16 [AP019371]
831460
831388
-
Val
GAC
-
¡û
>C191026496
CP023865
Actinomycetota
Actinoplanes teichomyceticus ATCC 31121 [CP023865]
6813408
6813334
-
Val
GAC
-
¡û
>C191026499
CP023865
Actinomycetota
Actinoplanes teichomyceticus ATCC 31121 [CP023865]
6772923
6772849
-
Val
GAC
-
¡û
>W1911492540
OBDY01000010
Actinomycetota
Actinoplanes atraurantiacus CGMCC 4.6857 [OBDY]
190387
190315
-
Val
GAC
[ENA]
¡û
>C121007276
CP003170
Actinomycetota
Actinoplanes sp. SE50/110 [CP003170]
7711404
7711330
-
Val
GAC
[Ensembl]
¡û
>C121007279
CP003170
Actinomycetota
Actinoplanes sp. SE50/110 [CP003170]
7671863
7671789
-
Val
GAC
[Ensembl]
¡û
>W1710561010
FONV01000005
Actinomycetota
Actinoplanes philippinensis [FONV]
657504
657430
-
Val
GAC
[ENA]
¡û
>W1710561013
FONV01000005
Actinomycetota
Actinoplanes philippinensis [FONV]
637876
637802
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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