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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.354581 (30 seq.)
>C171118318
CP021376
Gammaproteobacteria
Oceanisphaera avium AMac2203 [CP021376]
452911
452836
-
Asn
GTT
-
¡û
>C171118319
CP021376
Gammaproteobacteria
Oceanisphaera avium AMac2203 [CP021376]
411245
411170
-
Asn
GTT
-
¡û
>C171118320
CP021376
Gammaproteobacteria
Oceanisphaera avium AMac2203 [CP021376]
411132
411057
-
Asn
GTT
-
¡û
>C171118321
CP021376
Gammaproteobacteria
Oceanisphaera avium AMac2203 [CP021376]
411019
410944
-
Asn
GTT
-
¡û
>C171118322
CP021376
Gammaproteobacteria
Oceanisphaera avium AMac2203 [CP021376]
410906
410831
-
Asn
GTT
-
¡û
>WENV170016286
AZIJ01019205
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
2870
2795
-
Asn
GTT
[ENA]
¢þ
>C181012424
CP012621
Gammaproteobacteria
Zobellella denitrificans F13-1 [CP012621]
2375439
2375514
+
Asn
GTT
-
¡û
>C181012425
CP012621
Gammaproteobacteria
Zobellella denitrificans F13-1 [CP012621]
2527430
2527505
+
Asn
GTT
-
¡û
>C181062857
CP022355
Gammaproteobacteria
Paraphotobacterium marinum NSCS20N07D [CP022355, CP022356]
125356
125431
+
Asn
GTT
-
¡û
>C181062858
CP022355
Gammaproteobacteria
Paraphotobacterium marinum NSCS20N07D [CP022355, CP022356]
125443
125518
+
Asn
GTT
-
¡û
>C181062859
CP022355
Gammaproteobacteria
Paraphotobacterium marinum NSCS20N07D [CP022355, CP022356]
125530
125605
+
Asn
GTT
-
¡û
>C181062873
CP022355
Gammaproteobacteria
Paraphotobacterium marinum NSCS20N07D [CP022355, CP022356]
360232
360307
+
Asn
GTT
-
¡û
>W1910371801
FUFT01000002
Gammaproteobacteria
Vibrio palustris CECT 9027 [FUFT]
263766
263691
-
Asn
GTT
[ENA]
¡û
>W1910784524
MPZM01000005
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
55463
55538
+
Asn
GTT
[ENA]
¡û
>W1910784575
MPZM01000043
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
33
108
+
Asn
GTT
[ENA]
¡û
>W1910784576
MPZM01000043
Gammaproteobacteria
Oceanisphaera arctica V1-41 [MPZM]
137
212
+
Asn
GTT
[ENA]
¡û
>W1911075369
NMUO01000011
Gammaproteobacteria
Zobellella denitrificans ZD1 [NMUO]
44965
45040
+
Asn
GTT
[ENA]
¡û
>W1911075410
NMUO01000058
Gammaproteobacteria
Zobellella denitrificans ZD1 [NMUO]
15783
15708
-
Asn
GTT
[ENA]
¡û
>W1911219007
NRRB01000009
Gammaproteobacteria
Paraferrimonas haliotis AFRC7-2-1 [NRRB]
78856
78781
-
Asn
GTT
[ENA]
¡û
>W1911219013
NRRB01000012
Gammaproteobacteria
Paraferrimonas haliotis AFRC7-2-1 [NRRB]
4933
5008
+
Asn
GTT
[ENA]
¡û
>W1911219014
NRRB01000012
Gammaproteobacteria
Paraferrimonas haliotis AFRC7-2-1 [NRRB]
5025
5100
+
Asn
GTT
[ENA]
¡û
>W1911219015
NRRB01000012
Gammaproteobacteria
Paraferrimonas haliotis AFRC7-2-1 [NRRB]
5117
5192
+
Asn
GTT
[ENA]
¡û
>W1911219062
NRRC01000007
Gammaproteobacteria
Paraferrimonas haliotis CFD7-4-2 [NRRC]
79009
78934
-
Asn
GTT
[ENA]
¡û
>W1911219063
NRRC01000007
Gammaproteobacteria
Paraferrimonas haliotis CFD7-4-2 [NRRC]
78917
78842
-
Asn
GTT
[ENA]
¡û
>W1911219064
NRRC01000007
Gammaproteobacteria
Paraferrimonas haliotis CFD7-4-2 [NRRC]
78825
78750
-
Asn
GTT
[ENA]
¡û
>W1911578678
PEIB01000008
Gammaproteobacteria
Veronia nyctiphanis CAIM 600 [PEIB]
54295
54370
+
Asn
GTT
[ENA]
¡û
>W1911578690
PEIB01000020
Gammaproteobacteria
Veronia nyctiphanis CAIM 600 [PEIB]
418
493
+
Asn
GTT
[ENA]
¡û
>W1911578712
PEIB01000064
Gammaproteobacteria
Veronia nyctiphanis CAIM 600 [PEIB]
2
77
+
Asn
GTT
[ENA]
¡û
>W1810471875
QAGM01000011
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
11742
11817
+
Asn
GTT
[ENA]
¡û
>C121007343
CP003171
Gammaproteobacteria
Oceanimonas sp. GK1 [CP003171]
2596187
2596262
+
Asn
GTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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