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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.354623 (86 seq.)
>W1711124576
LUKH01000004
Alphaproteobacteria
Leisingera sp. F5 [LUKH]
11666
11740
+
Val
GAC
[ENA]
¡û
>W1711258976
LYUZ01000103
Alphaproteobacteria
Leisingera sp. JC1 [LYUZ]
11777
11851
+
Val
GAC
[ENA]
¡û
>W1711361449
MDLF01000063
Alphaproteobacteria
Rhodobacteraceae bacterium (ex Bugula neritina AB1) [MDLF]
139874
139948
+
Val
GAC
[ENA]
¡û
>W1711511047
MLCB01000137
Alphaproteobacteria
Planktotalea frisia [MLCB]
26787
26861
+
Val
GAC
[ENA]
¡û
>C171092111
CP019312
Alphaproteobacteria
Tateyamaria omphalii DOK1-4 [CP019312]
3676746
3676672
-
Val
GAC
-
¡û
>w027982
ABCR01000001
Alphaproteobacteria
Roseobacter sp. AzwK-3b [ABCR]
36843
36919
+
Val
GAC
[ENA]
¡û
>WENV180214591
OBAP01017187
[OBAP] marine metagenome; ENVO:00002010 for 'seawater
196
122
-
Val
GAC
[ENA]
¢þ
>WENV180294386
OBIY01112573
[OBIY] beach sand metagenome; beach sand
17
91
+
Val
GAC
[ENA]
¢þ
>WENV180388622
OBPH01038040
[OBPH] marine metagenome; Sterile flask
98
172
+
Val
GAC
[ENA]
¢þ
>WENV180392500
OBPO01105485
[OBPO] marine metagenome; seawater
340
266
-
Val
GAC
[ENA]
¢þ
>WENV180397272
OBPX01042411
[OBPX] marine metagenome; vv
202
276
+
Val
GAC
[ENA]
¢þ
>WENV180638139
OCRH01019049
[OCRH] marine metagenome; ENVO_00002010
45
119
+
Val
GAC
[ENA]
¢þ
>W141151516
AXBD01000002
Alphaproteobacteria
Leisingera daeponensis DSM 23529 [AXBD]
2705508
2705582
+
Val
GAC
[ENA]
¡û
>W141151571
AXBE01000001
Alphaproteobacteria
Leisingera aquimarina DSM 24565 [AXBE]
1006514
1006440
-
Val
GAC
[ENA]
¡û
>W141151782
AXBI01000017
Alphaproteobacteria
Leisingera caerulea DSM 24564 [AXBI]
1062593
1062667
+
Val
GAC
[ENA]
¡û
>WENV182546410
OJBO01022426
[OJBO] seawater metagenome; Sea water
672
746
+
Val
GAC
[ENA]
¢þ
>WENV182549735
OJBY01020965
[OJBY] seawater metagenome; Sea water
595
669
+
Val
GAC
[ENA]
¢þ
>WENV182571301
OJFG01010617
[OJFG] seawater metagenome; Sea water
119
45
-
Val
GAC
[ENA]
¢þ
>WENV170016028
AZIJ01008846
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
321
247
-
Val
GAC
[ENA]
¢þ
>WENV170229576
CEQG01135204
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
617
543
-
Val
GAC
[ENA]
¢þ
>WENV170536565
CEWP01223799
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
542
468
-
Val
GAC
[ENA]
¢þ
>WENV170608337
FUWD010919584
[FUWD] metagenome; unknown
196
270
+
Val
GAC
[ENA]
¢þ
>WENV170634353
FYBJ01000328
[FYBJ] marine metagenome; marine
8344
8418
+
Val
GAC
[ENA]
¢þ
>WENV170634526
FYBJ01001725
[FYBJ] marine metagenome; marine
2880
2954
+
Val
GAC
[ENA]
¢þ
>WENV170652609
JRYH01008797
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
239
165
-
Val
GAC
[ENA]
¢þ
>WENV170655601
JTFN01050455
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
81
7
-
Val
GAC
[ENA]
¢þ
>WENV170656096
JTFN01132472
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
125
199
+
Val
GAC
[ENA]
¢þ
>W09111648
ABXE01000006
Alphaproteobacteria
Rhodobacteraceae bacterium HTCC2083 HTCC2083 [ABXE]
400283
400209
-
Val
GAC
[ENA]
¡û
>W09111724
ABXF01000047
Alphaproteobacteria
Rhodobacterales bacterium Y4I [ABXF]
46628
46702
+
Val
GAC
[ENA]
¡û
>WENV170962740
MRWF01025270
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
24098
24024
-
Val
GAC
[ENA]
¢þ
>WENV170963547
MRWG01000281
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
67600
67526
-
Val
GAC
[ENA]
¢þ
>WENV170963615
MRWG01000370
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
53870
53944
+
Val
GAC
[ENA]
¢þ
>C181064489
CP022415
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SMR1 [CP022415]
2862395
2862469
+
Val
GAC
-
¡û
>C191141160
CP035417
Alphaproteobacteria
Leisingera sp. NJS204 [CP035417]
58499
58425
-
Val
GAC
-
¡û
>C191158472
CP038234
Alphaproteobacteria
Leisingera sp. NJS201 [CP038234]
3846327
3846401
+
Val
GAC
-
¡û
>W141564881
JIBC01000005
Alphaproteobacteria
Sulfitobacter sp. 20_GPM-1509m [JIBC]
24153
24227
+
Val
GAC
[ENA]
¡û
>W1910285052
FREU01000002
Alphaproteobacteria
Rhodobacteraceae bacterium Alg231-30 [FREU]
997320
997246
-
Val
GAC
[ENA]
¡û
>W1910442810
FWFN01000006
Alphaproteobacteria
Pseudooceanicola marinus CECT 7751 [FWFN]
11603
11677
+
Val
GAC
[ENA]
¡û
>W1910443117
FWFU01000002
Alphaproteobacteria
Roseovarius halotolerans CECT 8110 [FWFU]
444422
444496
+
Val
GAC
[ENA]
¡û
>W1910443263
FWFX01000019
Alphaproteobacteria
Roseovarius albus CECT 7450 [FWFX]
41436
41510
+
Val
GAC
[ENA]
¡û
>C141008398
CP006773
Alphaproteobacteria
Leisingera methylohalidivorans DSM 14336 DSM 14336; MB2 [CP006773]
58867
58793
-
Val
GAC
[Ensembl]
¡û
>W1910469000
FWXB01000015
Alphaproteobacteria
Roseovarius aestuarii CECT 7745 [FWXB]
43356
43430
+
Val
GAC
[ENA]
¡û
>W1911492652
OBEA01000001
Alphaproteobacteria
Pseudooceanicola antarcticus CGMCC 1.12662 [OBEA]
12299
12373
+
Val
GAC
[ENA]
¡û
>W1911544879
OUMZ01000003
Alphaproteobacteria
Roseovarius sp. EL26 [OUMZ]
121689
121763
+
Val
GAC
[ENA]
¡û
>W1911638549
PVWS01000033
Alphaproteobacteria
Roseovarius sp. A46 [PVWS]
1731
1657
-
Val
GAC
[ENA]
¡û
>W1911652500
QBBT01000019
Alphaproteobacteria
Pseudooceanicola algae Lw-13e [QBBT]
11797
11871
+
Val
GAC
[ENA]
¡û
>W1810061274
PDNI01000065
Alphaproteobacteria
Roseovarius nitratireducens TFZ [PDNI]
267043
267117
+
Val
GAC
[ENA]
¡û
>W1810063483
PDUV01000004
Alphaproteobacteria
Rhodobacteraceae bacterium 4F10 [PDUV]
211747
211673
-
Val
GAC
[ENA]
¡û
>W1810101700
PGTC01000015
Alphaproteobacteria
Pseudooceanicola marinus LMG 23705 [PGTC]
322465
322391
-
Val
GAC
[ENA]
¡û
>W1810101765
PGTD01000017
Alphaproteobacteria
Pseudooceanicola antarcticus Ar-45 [PGTD]
697841
697767
-
Val
GAC
[ENA]
¡û
>W1810494777
QBFE01000024
Alphaproteobacteria
Sulfitobacter sp. DFL-23 [QBFE]
188572
188498
-
Val
GAC
[ENA]
¡û
>W1810578014
QEOS01000005
Alphaproteobacteria
Phaeobacter sp. JL2872 JL2872 [QEOS]
12499
12573
+
Val
GAC
[ENA]
¡û
>W1810584285
QFAR01000001
Alphaproteobacteria
Pelagicola sp. LXJ1103 [QFAR]
2251076
2251002
-
Val
GAC
[ENA]
¡û
>W1810633774
QITQ01000005
Alphaproteobacteria
Roseovarius amoyensis GCL-8 [QITQ]
166284
166210
-
Val
GAC
[ENA]
¡û
>W1810685705
QKZM01000026
Alphaproteobacteria
Planktotalea frisia DSM 23709 [QKZM]
13905
13831
-
Val
GAC
[ENA]
¡û
>W1511482568
JWLC01000013
Alphaproteobacteria
Leisingera sp. ANG-M1 [JWLC]
296988
296914
-
Val
GAC
[ENA]
¡û
>W1511482637
JWLD01000078
Alphaproteobacteria
Leisingera sp. ANG-Vp [JWLD]
3948
4022
+
Val
GAC
[ENA]
¡û
>W1511482672
JWLE01000005
Alphaproteobacteria
Leisingera sp. ANG-DT [JWLE]
660542
660468
-
Val
GAC
[ENA]
¡û
>W1511482729
JWLF01000006
Alphaproteobacteria
Leisingera sp. ANG-S3 [JWLF]
11065
11139
+
Val
GAC
[ENA]
¡û
>W1511482792
JWLG01000019
Alphaproteobacteria
Leisingera sp. ANG-M6 [JWLG]
125721
125647
-
Val
GAC
[ENA]
¡û
>W1511482828
JWLH01000005
Alphaproteobacteria
Leisingera sp. ANG-S5 [JWLH]
653374
653300
-
Val
GAC
[ENA]
¡û
>W1511482881
JWLI01000011
Alphaproteobacteria
Leisingera sp. ANG-M7 [JWLI]
11295
11369
+
Val
GAC
[ENA]
¡û
>W1511483003
JWLL01000005
Alphaproteobacteria
Tateyamaria sp. ANG-S1 [JWLL]
649215
649141
-
Val
GAC
[ENA]
¡û
>W1511483063
JWLM01000014
Alphaproteobacteria
Leisingera sp. ANG-S [JWLM]
11064
11138
+
Val
GAC
[ENA]
¡û
>W11170472
AFPM01000272
Alphaproteobacteria
Oceanicola sp. S124 [AFPM]
6114
6188
+
Val
GAC
[ENA]
¡û
>C161083460
CP015124
Alphaproteobacteria
Phaeobacter gallaeciensis JL2886 [CP015124]
1972807
1972881
+
Val
GAC
-
¡û
>W1610092712
CYSA01000016
Alphaproteobacteria
Thalassovita gelatinovora gelatinovorus [CYSA]
10064
10138
+
Val
GAC
[ENA]
¡û
>W1610093070
CYSR01000031
Alphaproteobacteria
Leisingera aquaemixtae [CYSR]
343597
343523
-
Val
GAC
[ENA]
¡û
>W1610094610
CYTW01000006
Alphaproteobacteria
Shimia thalassica CECT 7735 [CYTW]
211801
211727
-
Val
GAC
[ENA]
¡û
>W1610578340
LAXJ01000009
Alphaproteobacteria
Roseovarius atlanticus [LAXJ]
216553
216627
+
Val
GAC
[ENA]
¡û
>WENV074305
AACY023967554
Marine microbial communities from Global Ocean Sampling (GOS)
639
563
-
Val
GAC
[ENA]
>W1610935548
LUKH01000004
Alphaproteobacteria
Leisingera sp. F5 [LUKH]
11666
11740
+
Val
GAC
[ENA]
¡û
>W1611021241
LYUZ01000103
Alphaproteobacteria
Leisingera sp. JC1 [LYUZ]
11777
11851
+
Val
GAC
[ENA]
¡û
>WENV000861
AACY020027438
Marine microbial communities from Global Ocean Sampling (GOS)
744
668
-
Val
GAC
[ENA]
>W1710083035
BDIY01000001
Alphaproteobacteria
Roseovarius sp. A-2 [BDIY]
509649
509575
-
Val
GAC
[ENA]
¡û
>W1710095967
CYSA01000016
Alphaproteobacteria
Thalassovita gelatinovora gelatinovorus [CYSA]
10064
10138
+
Val
GAC
[ENA]
¡û
>W1710096278
CYSR01000031
Alphaproteobacteria
Leisingera aquaemixtae [CYSR]
343597
343523
-
Val
GAC
[ENA]
¡û
>W1710541221
FNYD01000015
Alphaproteobacteria
Cribrihabitans marinus [FNYD]
48874
48800
-
Val
GAC
[ENA]
¡û
>W1710545530
FOBO01000006
Alphaproteobacteria
Roseovarius tolerans [FOBO]
71949
71875
-
Val
GAC
[ENA]
¡û
>W1710551203
FOFW01000021
Alphaproteobacteria
Thalassovita gelatinovora gelatinovorus [FOFW]
9976
10050
+
Val
GAC
[ENA]
¡û
>W1710584532
FQVP01000004
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae [FQVP]
562463
562389
-
Val
GAC
[ENA]
¡û
>W1710585631
FQWM01000005
Alphaproteobacteria
Cognatishimia maritima maritimus [FQWM]
15949
16023
+
Val
GAC
[ENA]
¡û
>W1710588796
FQZQ01000016
Alphaproteobacteria
Shimia gijangensis [FQZQ]
16817
16891
+
Val
GAC
[ENA]
¡û
>W1710591389
FRBR01000004
Alphaproteobacteria
Roseovarius pacificus [FRBR]
41289
41215
-
Val
GAC
[ENA]
¡û
>W1710600156
FTPS01000001
Alphaproteobacteria
Pontibaca methylaminivorans [FTPS]
1560862
1560788
-
Val
GAC
[ENA]
¡û
>W1710697213
LAXJ01000009
Alphaproteobacteria
Roseovarius atlanticus [LAXJ]
216553
216627
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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