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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.355084 (79 seq.)
>W1710785713
LJIC01000058
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
5540
5615
+
Thr
CGT
[ENA]
¡û
>W1710802953
LJYE01000115
Alphaproteobacteria
Bradyrhizobium pachyrhizi [LJYE]
58306
58231
-
Thr
CGT
[ENA]
¡û
>W1711067420
LSEF01000100
Alphaproteobacteria
Bradyrhizobium neotropicale [LSEF]
305043
305118
+
Thr
CGT
[ENA]
¡û
>W1711129637
LUUB01000129
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
28967
29042
+
Thr
CGT
[ENA]
¡û
>W1711193142
LWUI01000014
Alphaproteobacteria
Bradyrhizobium elkanii [LWUI]
9145
9220
+
Thr
CGT
[ENA]
¡û
>W1711206725
LXEM01000007
Alphaproteobacteria
Bradyrhizobium elkanii [LXEM]
205244
205169
-
Thr
CGT
[ENA]
¡û
>W1711487066
MKFI01000005
Alphaproteobacteria
Bradyrhizobium mercantei SEMIA 6399 [MKFI]
72079
72004
-
Thr
CGT
[ENA]
¡û
>W1711505863
MKVX01000005
Alphaproteobacteria
Rhizobiales bacterium 62-47 [MKVX]
447560
447635
+
Thr
CGT
[ENA]
¡û
>W1711613036
MOXO01000492
Alphaproteobacteria
Bradyrhizobium elkanii [MOXO]
307
382
+
Thr
CGT
[ENA]
¡û
>W1711783518
MVOD01000017
Alphaproteobacteria
Rhodopseudomonas palustris [MVOD]
58193
58268
+
Thr
CGT
[ENA]
¡û
>C171131948
LT859959
Alphaproteobacteria
Bradyrhizobium sp. ORS 285 [LT859959]
7587912
7587837
-
Thr
CGT
-
¡û
>W131164085
ARAG01000005
Alphaproteobacteria
Bradyrhizobium elkanii USDA 76 [ARAG]
11315
11390
+
Thr
CGT
[ENA]
¡û
>W131227238
AUEZ01000057
Alphaproteobacteria
Bradyrhizobium sp. Ai1a-2 [AUEZ]
57098
57173
+
Thr
CGT
[ENA]
¡û
>W131227286
AUFA01000020
Alphaproteobacteria
Bradyrhizobium sp. Cp5.3 [AUFA]
5614
5539
-
Thr
CGT
[ENA]
¡û
>C004076
CP000494
Alphaproteobacteria
Bradyrhizobium sp. BTAi1 [CP000494]
289723
289648
-
Thr
CGT
[Ensembl]
¡û
>C018967
CP000283
Alphaproteobacteria
Rhodopseudomonas palustris BisB5 [CP000283]
537639
537564
-
Thr
CGT
[Ensembl]
¡û
>C018976
BX571963
Alphaproteobacteria
Rhodopseudomonas palustris [BX571963]
284219
284294
+
Thr
CGT
[Ensembl]
¡û
>C019068
CP000250
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [CP000250]
354148
354073
-
Thr
CGT
[Ensembl]
¡û
>WENV180255281
OBEQ010710570
[OBEQ] groundwater metagenome; groundwater
389
314
-
Thr
CGT
[ENA]
¢þ
>WENV181162575
OEIO01001343
[OEIO] marine metagenome; sea ice
1240
1315
+
Thr
CGT
[ENA]
¢þ
>WENV181172641
OEIV010883576
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
161
86
-
Thr
CGT
[ENA]
¢þ
>WENV181308340
OFIS01005832
[OFIS] sludge metagenome; sludge
527
452
-
Thr
CGT
[ENA]
¢þ
>WENV181379335
OFRD01000593
[OFRD] wastewater metagenome; Exp Tend CN 100WW
11950
11875
-
Thr
CGT
[ENA]
¢þ
>WENV181386017
OFRL01000343
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
381
456
+
Thr
CGT
[ENA]
¢þ
>WENV181399869
OFSF01000090
[OFSF] wastewater metagenome; Exp Tend VB 100WW
157
82
-
Thr
CGT
[ENA]
¢þ
>W141149768
AWZU01000033
Alphaproteobacteria
Bradyrhizobium sp. ARR65 [AWZU]
30209
30284
+
Thr
CGT
[ENA]
¡û
>W141150342
AXAH01000040
Alphaproteobacteria
Bradyrhizobium elkanii USDA 3254 [AXAH]
13660
13735
+
Thr
CGT
[ENA]
¡û
>W141150353
AXAI01000003
Alphaproteobacteria
Bradyrhizobium sp. Tv2a-2 [AXAI]
346834
346909
+
Thr
CGT
[ENA]
¡û
>W141150724
AXAP01000026
Alphaproteobacteria
Bradyrhizobium elkanii WSM2783 [AXAP]
75473
75398
-
Thr
CGT
[ENA]
¡û
>W141151296
AXAY01000021
Alphaproteobacteria
Bradyrhizobium sp. WSM3983 [AXAY]
5540
5615
+
Thr
CGT
[ENA]
¡û
>W141223328
BADD01000673
Alphaproteobacteria
Rhodopseudomonas sp. B29 [BADD]
2541
2616
+
Thr
CGT
[ENA]
¡û
>W141240082
CAFK01000112
Alphaproteobacteria
Bradyrhizobium sp. STM 3843 [CAFK]
32917
32842
-
Thr
CGT
[ENA]
¡û
>W141278124
JAFC01000029
Alphaproteobacteria
Bradyrhizobium elkanii USDA 94 [JAFC]
118137
118212
+
Thr
CGT
[ENA]
¡û
>WENV182962862
OKWO01001585
[OKWO] human gut metagenome; stool
1449
1374
-
Thr
CGT
[ENA]
¢þ
>WENV182966085
OKWU01001730
[OKWU] human gut metagenome; stool
521
446
-
Thr
CGT
[ENA]
¢þ
>WENV182966588
OKWW01003375
[OKWW] human gut metagenome; stool
784
709
-
Thr
CGT
[ENA]
¢þ
>WENV183660357
ORJL010016464
[ORJL] groundwater metagenome; groundwater
1727
1652
-
Thr
CGT
[ENA]
¢þ
>WENV183684916
ORMF010774510
[ORMF] groundwater metagenome; groundwater
704
779
+
Thr
CGT
[ENA]
¢þ
>WENV183736609
PJUC01022660
[PJUC] soil metagenome; Soil enriched on filter paper
151
226
+
Thr
CGT
[ENA]
¢þ
>WENV183740608
PJUF01004376
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
2492
2567
+
Thr
CGT
[ENA]
¢þ
>C181001039
AP014946
Alphaproteobacteria
Variibacter gotjawalensis GJW-30 [AP014946]
50916
50991
+
Thr
CGT
-
¡û
>W09103842
AAKZ01000014
Alphaproteobacteria
Rhodopseudomonas palustris BisB5 [AAKZ]
143223
143148
-
Thr
CGT
[ENA]
¡û
>W09104109
AALJ01000002
Alphaproteobacteria
Bradyrhizobium sp. BTAi1 [AALJ]
387092
387017
-
Thr
CGT
[ENA]
¡û
>W09104430
AALR01000016
Alphaproteobacteria
Rhodopseudomonas palustris BisB18 [AALR]
103374
103449
+
Thr
CGT
[ENA]
¡û
>C191221063
LR590083
Alphaproteobacteria
Beijerinckiaceae bacterium RH AL1 [LR590083]
1911491
1911566
+
Thr
CGT
-
¡û
>W141730473
JNIJ01000019
Alphaproteobacteria
Bradyrhizobium sp. URHD0069 [JNIJ]
64491
64566
+
Thr
CGT
[ENA]
¡û
>W1910693445
MDEP01000039
Alphaproteobacteria
Bradyrhizobium sp. UASWS1016 [MDEP]
102222
102297
+
Thr
CGT
[ENA]
¡û
>C09108161
CP001196
Alphaproteobacteria
Afipia carboxidovorans OM5 OM5; ATCC 49405 [CP001196]
307869
307794
-
Thr
CGT
-
¡û
>W1911245268
NSJY01000006
Alphaproteobacteria
Bradyrhizobium sp. UFLA03-84 [NSJY]
195073
195148
+
Thr
CGT
[ENA]
¡û
>W1911629577
PSRS01000318
Alphaproteobacteria
Bradyrhizobium sp. Leo121 [PSRS]
5351
5426
+
Thr
CGT
[ENA]
¡û
>W1911760556
QWVU01000010
Alphaproteobacteria
Rhodopseudomonas palustris R1 [QWVU]
309027
308952
-
Thr
CGT
[ENA]
¡û
>W1911809211
QYYD01000006
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.18 [QYYD]
5603
5678
+
Thr
CGT
[ENA]
¡û
>W1810089280
PGEQ01000001
Alphaproteobacteria
Bradyrhizobium lablabi GAS165 [PGEQ]
5939045
5938970
-
Thr
CGT
[ENA]
¡û
>W1810367880
PVYZ01000016
Alphaproteobacteria
Rhizobium tropici NFR14 [PVYZ]
76551
76626
+
Thr
CGT
[ENA]
¡û
>W1810400111
PYFV01000012
Alphaproteobacteria
Bradyrhizobium sp. MOS004 [PYFV]
136043
135968
-
Thr
CGT
[ENA]
¡û
>W1810787530
QRDT01000039
Alphaproteobacteria
Rhodopseudomonas pentothenatexigens JA575 [QRDT]
6474
6399
-
Thr
CGT
[ENA]
¡û
>W1810884427
QUMP01000039
Alphaproteobacteria
Rhodopseudomonas thermotolerans JA576,NBRC 108863,KCTC 15144 [QUMP]
6474
6399
-
Thr
CGT
[ENA]
¡û
>W10119552
ADVZ01000001
Alphaproteobacteria
Afipia sp. 1NLS2 [ADVZ]
1483821
1483746
-
Thr
CGT
[ENA]
¡û
>C11116254
CP002821
Alphaproteobacteria
Afipia carboxidovorans OM4 [CP002821]
220839
220914
+
Thr
CGT
[Ensembl]
¡û
>C11118780
CP002418
Alphaproteobacteria
Rhodopseudomonas palustris [CP002418]
413476
413401
-
Thr
CGT
[Ensembl]
¡û
>W11125818
ADVZ01000001
Alphaproteobacteria
Afipia sp. 1NLS2 [ADVZ]
1483821
1483746
-
Thr
CGT
[ENA]
¡û
>W1511533283
JYMR01000045
Alphaproteobacteria
Bradyrhizobium sp. LTSP849 [JYMR]
168494
168419
-
Thr
CGT
[ENA]
¡û
>W1511533316
JYMS01000027
Alphaproteobacteria
Bradyrhizobium sp. LTSP857 [JYMS]
176836
176761
-
Thr
CGT
[ENA]
¡û
>W1511681444
LFIP01000147
Alphaproteobacteria
Bradyrhizobium embrapense SEMIA 6208 [LFIP]
195
120
-
Thr
CGT
[ENA]
¡û
>W1511684049
LFLZ01000107
Alphaproteobacteria
Bradyrhizobium tropiciagri SEMIA 6148 [LFLZ]
16742
16667
-
Thr
CGT
[ENA]
¡û
>W121065234
AJPW01000042
Alphaproteobacteria
Bradyrhizobium elkanii CCBAU 43297 [AJPW]
41084
41009
-
Thr
CGT
[ENA]
¡û
>W121127089
CAFH01000183
Alphaproteobacteria
Bradyrhizobium sp. ORS 285 [CAFH]
5454
5529
+
Thr
CGT
[ENA]
¡û
>W121127127
CAFI01000187
Alphaproteobacteria
Bradyrhizobium sp. ORS 375 [CAFI]
88
13
-
Thr
CGT
[ENA]
¡û
>W121127159
CAFJ01000087
Alphaproteobacteria
Bradyrhizobium sp. STM 3809 [CAFJ]
7325
7250
-
Thr
CGT
[ENA]
¡û
>W1610049396
BBEX01000346
Alphaproteobacteria
Bradyrhizobium sp. 17-4 [BBEX]
258
333
+
Thr
CGT
[ENA]
¡û
>W1610649519
LJIC01000058
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
5540
5615
+
Thr
CGT
[ENA]
¡û
>W1610666810
LJYE01000115
Alphaproteobacteria
Bradyrhizobium pachyrhizi [LJYE]
58306
58231
-
Thr
CGT
[ENA]
¡û
>W1610907990
LSEF01000100
Alphaproteobacteria
Bradyrhizobium neotropicale [LSEF]
305043
305118
+
Thr
CGT
[ENA]
¡û
>W1610940710
LUUB01000129
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
28967
29042
+
Thr
CGT
[ENA]
¡û
>W1710045795
BBEX01000346
Alphaproteobacteria
Bradyrhizobium sp. 17-4 [BBEX]
258
333
+
Thr
CGT
[ENA]
¡û
>W1710536577
FNTH01000001
Alphaproteobacteria
Bradyrhizobium erythrophlei [FNTH]
5354578
5354653
+
Thr
CGT
[ENA]
¡û
>W1710546003
FOBX01000005
Alphaproteobacteria
Bradyrhizobium sp. OK095 [FOBX]
274473
274548
+
Thr
CGT
[ENA]
¡û
>W1710548432
FODT01000017
Alphaproteobacteria
Rhodopseudomonas pseudopalustris [FODT]
32847
32922
+
Thr
CGT
[ENA]
¡û
>W1710735612
LGHK01000295
Alphaproteobacteria
Bradyrhizobium sp. NAS96.2 [LGHK]
2832
2757
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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