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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.355179 (83 seq.)
>W1711230003
LXZG01000114
Bacillota
Ligilactobacillus salivarius [LXZG]
12368
12295
-
Gln
TTG
[ENA]
¡û
>W1711462351
MJHQ01000037
Bacillota
Streptococcus agalactiae [MJHQ]
206346
206419
+
Gln
TTG
[ENA]
¡û
>W1711462411
MJHR01000032
Bacillota
Streptococcus agalactiae [MJHR]
330051
329978
-
Gln
TTG
[ENA]
¡û
>W1711462549
MJHU01000010
Bacillota
Streptococcus agalactiae [MJHU]
177634
177707
+
Gln
TTG
[ENA]
¡û
>W1711462662
MJHV01000034
Bacillota
Streptococcus agalactiae [MJHV]
330019
329946
-
Gln
TTG
[ENA]
¡û
>W1711687564
MSCR01000012
Bacillota
Ligilactobacillus salivarius [MSCR]
63
136
+
Gln
TTG
[ENA]
¡û
>W1711943455
NBDX01000006
Bacillota
Ligilactobacillus salivarius [NBDX]
670
743
+
Gln
TTG
[ENA]
¡û
>W1711943496
NBDY01000007
Bacillota
Ligilactobacillus salivarius [NBDY]
669
742
+
Gln
TTG
[ENA]
¡û
>W1711943555
NBDZ01000010
Bacillota
Ligilactobacillus salivarius [NBDZ]
105591
105518
-
Gln
TTG
[ENA]
¡û
>W1711943624
NBEB01000025
Bacillota
Ligilactobacillus salivarius [NBEB]
637
710
+
Gln
TTG
[ENA]
¡û
>W1711943671
NBEC01000027
Bacillota
Ligilactobacillus salivarius [NBEC]
175
248
+
Gln
TTG
[ENA]
¡û
>W1711943711
NBED01000008
Bacillota
Ligilactobacillus salivarius [NBED]
865
938
+
Gln
TTG
[ENA]
¡û
>W1711943772
NBEE01000012
Bacillota
Ligilactobacillus salivarius [NBEE]
189097
189024
-
Gln
TTG
[ENA]
¡û
>W1711943791
NBEF01000012
Bacillota
Ligilactobacillus salivarius [NBEF]
63
136
+
Gln
TTG
[ENA]
¡û
>W1711943839
NBEG01000009
Bacillota
Ligilactobacillus salivarius [NBEG]
63
136
+
Gln
TTG
[ENA]
¡û
>W1711943917
NBEH01000020
Bacillota
Ligilactobacillus salivarius [NBEH]
160899
160826
-
Gln
TTG
[ENA]
¡û
>W1711943931
NBEI01000010
Bacillota
Ligilactobacillus salivarius [NBEI]
63
136
+
Gln
TTG
[ENA]
¡û
>W1711943986
NBEJ01000007
Bacillota
Ligilactobacillus salivarius [NBEJ]
777
850
+
Gln
TTG
[ENA]
¡û
>W1711944029
NBEK01000009
Bacillota
Ligilactobacillus salivarius [NBEK]
604
677
+
Gln
TTG
[ENA]
¡û
>W1711944104
NBEL01000016
Bacillota
Ligilactobacillus salivarius [NBEL]
161539
161466
-
Gln
TTG
[ENA]
¡û
>W1711944174
NBEN01000004
Bacillota
Ligilactobacillus salivarius [NBEN]
668
741
+
Gln
TTG
[ENA]
¡û
>W1711944236
NBEO01000020
Bacillota
Ligilactobacillus salivarius [NBEO]
270896
270823
-
Gln
TTG
[ENA]
¡û
>W1711944278
NBEP01000057
Bacillota
Ligilactobacillus salivarius [NBEP]
3
76
+
Gln
TTG
[ENA]
¡û
>W1711944369
NBER01000014
Bacillota
Ligilactobacillus salivarius [NBER]
6766
6839
+
Gln
TTG
[ENA]
¡û
>W1711944417
NBES01000017
Bacillota
Ligilactobacillus salivarius [NBES]
813
886
+
Gln
TTG
[ENA]
¡û
>W1711944446
NBET01000013
Bacillota
Ligilactobacillus salivarius [NBET]
230
303
+
Gln
TTG
[ENA]
¡û
>W1711944534
NBEU01000019
Bacillota
Ligilactobacillus salivarius [NBEU]
160891
160818
-
Gln
TTG
[ENA]
¡û
>W1711944575
NBEV01000041
Bacillota
Ligilactobacillus salivarius [NBEV]
115464
115391
-
Gln
TTG
[ENA]
¡û
>W1711944605
NBEW01000022
Bacillota
Ligilactobacillus salivarius [NBEW]
3095
3168
+
Gln
TTG
[ENA]
¡û
>W1711944643
NBEX01000027
Bacillota
Ligilactobacillus salivarius [NBEX]
1332
1405
+
Gln
TTG
[ENA]
¡û
>W1712036001
NFHF01000034
Bacillota
Ligilactobacillus salivarius [NFHF]
471
544
+
Gln
TTG
[ENA]
¡û
>W1712036918
NFHV01000020
Bacillota
Ligilactobacillus salivarius [NFHV]
122
195
+
Gln
TTG
[ENA]
¡û
>W1712041982
NFLK01000020
Bacillota
Ligilactobacillus salivarius [NFLK]
471
544
+
Gln
TTG
[ENA]
¡û
>C171057169
CP017107
Bacillota
Ligilactobacillus salivarius CICC 23174 [CP017107]
112752
112679
-
Gln
TTG
-
¡û
>C171113790
CP020858
Bacillota
Ligilactobacillus salivarius ZLS006 [CP020858]
1433811
1433738
-
Gln
TTG
-
¡û
>C171128995
LT604074
Bacillota
Ligilactobacillus salivarius [LT604074]
1317002
1317075
+
Gln
TTG
-
¡û
>C012685
CP000233
Bacillota
Ligilactobacillus salivarius UCC118 [CP000233]
440722
440793
+
Gln
TTG
[Ensembl]
¡û
>WENV180853230
ODKW01046519
[ODKW] human metagenome; G_DNA_Tongue dorsum
605
532
-
Gln
TTG
[ENA]
¢þ
>WENV180858794
ODLC01033006
[ODLC] human metagenome; G_DNA_Tongue dorsum
542
468
-
Gln
TTG
[ENA]
¢þ
>WENV181129387
OEFX01018969
[OEFX] human metagenome; G_DNA_Tongue dorsum
887
961
+
Gln
TTG
[ENA]
¢þ
>WENV181197305
OERA01012775
[OERA] metagenome; Caecal content
366
293
-
Gln
TTG
[ENA]
¢þ
>WENV181198231
OERD01001874
[OERD] metagenome; water of meat washing
1026
1099
+
Gln
TTG
[ENA]
¢þ
>WENV181428679
OGCW01000062
[OGCW] metagenome; Human gut stool
75167
75094
-
Gln
TTG
[ENA]
¢þ
>WENV181456996
OGEH01003224
[OGEH] metagenome; Human gut stool
1751
1824
+
Gln
TTG
[ENA]
¢þ
>WENV181468134
OGES01000584
[OGES] metagenome; Human gut stool
58
131
+
Gln
TTG
[ENA]
¢þ
>WENV181483519
OGFK01007525
[OGFK] metagenome; Human gut stool
3164
3091
-
Gln
TTG
[ENA]
¢þ
>WENV181496886
OGGD01044949
[OGGD] metagenome; Human gut stool
153
226
+
Gln
TTG
[ENA]
¢þ
>WENV181502076
OGGI01004338
[OGGI] metagenome; Human gut stool
6312
6239
-
Gln
TTG
[ENA]
¢þ
>WENV181517253
OGGZ01003495
[OGGZ] metagenome; Human gut stool
1994
1921
-
Gln
TTG
[ENA]
¢þ
>WENV181539116
OGHZ01001567
[OGHZ] metagenome; Human gut stool
6610
6537
-
Gln
TTG
[ENA]
¢þ
>WENV181540825
OGIC01000013
[OGIC] metagenome; Human gut stool
149191
149118
-
Gln
TTG
[ENA]
¢þ
>WENV181550447
OGIM01004150
[OGIM] metagenome; Human gut stool
1211
1138
-
Gln
TTG
[ENA]
¢þ
>WENV181556804
OGIV01000361
[OGIV] metagenome; Human gut stool
35090
35017
-
Gln
TTG
[ENA]
¢þ
>WENV181582069
OGKB01000351
[OGKB] metagenome; Human gut stool
35032
34959
-
Gln
TTG
[ENA]
¢þ
>WENV181588670
OGKJ01000441
[OGKJ] metagenome; Human gut stool
12298
12225
-
Gln
TTG
[ENA]
¢þ
>WENV182402352
OIES01005718
[OIES] human gut metagenome; human gut
1275
1202
-
Gln
TTG
[ENA]
¢þ
>WENV182485744
OIRQ01006037
[OIRQ] human gut metagenome; human gut
1680
1607
-
Gln
TTG
[ENA]
¢þ
>WENV182495448
OITA01024211
[OITA] human gut metagenome; human gut
580
507
-
Gln
TTG
[ENA]
¢þ
>WENV182503433
OIUO01005887
[OIUO] human gut metagenome; human gut
1289
1362
+
Gln
TTG
[ENA]
¢þ
>WENV182506431
OIVA01007242
[OIVA] human gut metagenome; human gut
1064
1137
+
Gln
TTG
[ENA]
¢þ
>WENV182952565
OKVW01002380
[OKVW] human gut metagenome; human gut
6057
5984
-
Gln
TTG
[ENA]
¢þ
>WENV183472734
OMER01000053
[OMER] human gut metagenome; feces
58
131
+
Gln
TTG
[ENA]
¢þ
>C181182017
CP029616
Bacillota
Ligilactobacillus salivarius DJ-sa-01 [CP029616]
1397199
1397272
+
Gln
TTG
-
¡û
>W09123173
ACGT01000017
Bacillota
Ligilactobacillus salivarius ATCC 11741 [ACGT]
34956
34883
-
Gln
TTG
[ENA]
¡û
>W1910650023
LXZK01000017
Bacillota
Ligilactobacillus salivarius KLF004 [LXZK]
835
908
+
Gln
TTG
[ENA]
¡û
>W1910874535
NDYW01000022
Bacillota
Ligilactobacillus salivarius L28 [NDYW]
542
615
+
Gln
TTG
[ENA]
¡û
>W1911570186
PCZH01000014
Bacillota
Lactobacillus sp. UMNPBX2 [PCZH]
915
988
+
Gln
TTG
[ENA]
¡û
>W1810070435
PECX01000001
Bacillota
Ligilactobacillus salivarius SGL 03 [PECX]
1325146
1325073
-
Gln
TTG
[ENA]
¡û
>W1810185981
PKGN01000039
Bacillota
Ligilactobacillus salivarius 290 [PKGN]
24
97
+
Gln
TTG
[ENA]
¡û
>W1810472407
QAGU01000032
Bacillota
Ligilactobacillus salivarius DS2_12 [QAGU]
526
599
+
Gln
TTG
[ENA]
¡û
>W1810797355
QRMK01000020
Bacillota
Ligilactobacillus salivarius AM09-40 [QRMK]
256
329
+
Gln
TTG
[ENA]
¡û
>W1810829805
QSLH01000012
Bacillota
Ligilactobacillus salivarius AM25-8 [QSLH]
44
117
+
Gln
TTG
[ENA]
¡û
>W1810838183
QSTB01000013
Bacillota
Ligilactobacillus salivarius OM08-20 [QSTB]
36635
36562
-
Gln
TTG
[ENA]
¡û
>C151030915
CP007646
Bacillota
Ligilactobacillus salivarius JCM1046 [CP007646]
425909
425982
+
Gln
TTG
[Ensembl]
¡û
>C151082294
CP011403
Bacillota
Ligilactobacillus salivarius str. Ren [CP011403]
439405
439478
+
Gln
TTG
[Ensembl]
¡û
>W10124272
AEBA01000112
Bacillota
Ligilactobacillus salivarius ACS-116-V-Col5a [AEBA]
1840
1767
-
Gln
TTG
[ENA]
¡û
>C10109031
CP002034
Bacillota
Ligilactobacillus salivarius CECT 5713 [CP002034]
441294
441367
+
Gln
TTG
[Ensembl]
¡û
>W1511443808
JUTI01000024
Bacillota
Ligilactobacillus salivarius 778_LSAL [JUTI]
144
71
-
Gln
TTG
[ENA]
¡û
>W11131159
AEBA01000112
Bacillota
Ligilactobacillus salivarius ACS-116-V-Col5a [AEBA]
1840
1767
-
Gln
TTG
[ENA]
¡û
>W11168624
AFOI01000005
Bacillota
Ligilactobacillus salivarius GJ-24 [AFOI]
18414
18341
-
Gln
TTG
[ENA]
¡û
>W121045120
AICL01000003
Bacillota
Ligilactobacillus salivarius SMXD51 [AICL]
623974
624047
+
Gln
TTG
[ENA]
¡û
>W1710659055
JXKD01000001
Bacillota
Enterococcus aquimarinus [JXKD]
86
159
+
Gln
TTG
[ENA]
¡û
>W1710659069
JXKD01000003
Bacillota
Enterococcus aquimarinus [JXKD]
103357
103284
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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