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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.355217 (19 seq.)
>W1710776559
LIZW01000014
Gammaproteobacteria
Coxiella sp. DG_40 [LIZW]
72996
73071
+
Ala
TGC
[ENA]
¡û
>W131049111
AMVM01000047
Gammaproteobacteria
Stutzerimonas stutzeri B1SMN1 [AMVM]
3338
3263
-
Ala
TGC
[ENA]
¡û
>WENV182571279
OJFG01006139
[OJFG] seawater metagenome; Sea water
938
863
-
Ala
TGC
[ENA]
¢þ
>WENV170448533
CEUZ01015338
[CEUZ] marine metagenome genome assembly TARA_125_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
194
269
+
Ala
TGC
[ENA]
¢þ
>C151087050
CP011854
Gammaproteobacteria
Stutzerimonas stutzeri SLG510A3-8 [CP011854]
2900025
2899950
-
Ala
TGC
[Ensembl]
¡û
>WENV039822
AACY022038616
Marine microbial communities from Global Ocean Sampling (GOS)
405
330
-
Ala
TGC
[ENA]
>C11118072
CP002622
Gammaproteobacteria
Stutzerimonas stutzeri DSM 4166 [CP002622]
781561
781636
+
Ala
TGC
[Ensembl]
¡û
>C11118083
CP002622
Gammaproteobacteria
Stutzerimonas stutzeri DSM 4166 [CP002622]
1795141
1795216
+
Ala
TGC
[Ensembl]
¡û
>C11118106
CP002622
Gammaproteobacteria
Stutzerimonas stutzeri DSM 4166 [CP002622]
3615821
3615746
-
Ala
TGC
[Ensembl]
¡û
>C11118121
CP002622
Gammaproteobacteria
Stutzerimonas stutzeri DSM 4166 [CP002622]
2524405
2524330
-
Ala
TGC
[Ensembl]
¡û
>C121014954
CP003677
Gammaproteobacteria
Stutzerimonas stutzeri CCUG 29243 [CP003677]
988747
988822
+
Ala
TGC
[Ensembl]
¡û
>C121014962
CP003677
Gammaproteobacteria
Stutzerimonas stutzeri CCUG 29243 [CP003677]
1984730
1984805
+
Ala
TGC
[Ensembl]
¡û
>C121014973
CP003677
Gammaproteobacteria
Stutzerimonas stutzeri CCUG 29243 [CP003677]
3906265
3906190
-
Ala
TGC
[Ensembl]
¡û
>C121014991
CP003677
Gammaproteobacteria
Stutzerimonas stutzeri CCUG 29243 [CP003677]
2704054
2703979
-
Ala
TGC
[Ensembl]
¡û
>C161000930
AP014655
Gammaproteobacteria
Pseudomonas sp. MT-1 [AP014655]
1482735
1482810
+
Ala
TGC
-
¡û
>C161000966
AP014655
Gammaproteobacteria
Pseudomonas sp. MT-1 [AP014655]
3068689
3068614
-
Ala
TGC
-
¡û
>C161000981
AP014655
Gammaproteobacteria
Pseudomonas sp. MT-1 [AP014655]
1134
1059
-
Ala
TGC
-
¡û
>W121103080
AKYE01000154
Gammaproteobacteria
Stutzerimonas stutzeri XLDN-R [AKYE]
130
55
-
Ala
TGC
[ENA]
¡û
>W1610640665
LIZW01000014
Gammaproteobacteria
Coxiella sp. DG_40 [LIZW]
72996
73071
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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