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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.355225 (35 seq.)
>W1711055550
LRUZ01000021
Campylobacterota
Aliarcobacter skirrowii [LRUZ]
26719
26794
+
Lys
TTT
[ENA]
¡û
>W141289873
JARS01000021
Campylobacterota
Aliarcobacter faecis AF1078 [JARS]
192361
192436
+
Lys
TTT
[ENA]
¡û
>W141289925
JART01000019
Campylobacterota
Arcobacter sp. AF1028 [JART]
192357
192432
+
Lys
TTT
[ENA]
¡û
>WENV170640676
JFJP01023938
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
34122
34047
-
Lys
TTT
[ENA]
¢þ
>WENV170723620
LSQX01275574
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2704
2629
-
Lys
TTT
[ENA]
¢þ
>C181199795
CP031367
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [CP031367]
1427048
1427123
+
Lys
TTT
-
¡û
>C181199799
CP031367
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [CP031367]
1427410
1427485
+
Lys
TTT
-
¡û
>C191147119
CP035926
Campylobacterota
Aliarcobacter thereius LMG 24486 [CP035926]
379478
379403
-
Lys
TTT
-
¡û
>C191147123
CP035926
Campylobacterota
Aliarcobacter thereius LMG 24486 [CP035926]
379120
379045
-
Lys
TTT
-
¡û
>C191149095
CP036246
Campylobacterota
Arcobacter porcinus CCUG 56899 [CP036246]
387848
387773
-
Lys
TTT
-
¡û
>C191149099
CP036246
Campylobacterota
Arcobacter porcinus CCUG 56899 [CP036246]
387488
387413
-
Lys
TTT
-
¡û
>W1911576551
PDKD01000012
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [PDKD]
33607
33532
-
Lys
TTT
[ENA]
¡û
>W1911576555
PDKD01000012
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [PDKD]
33245
33170
-
Lys
TTT
[ENA]
¡û
>W1810584116
QEYG01000047
Campylobacterota
Aliarcobacter skirrowii 17-1201-3 [QEYG]
12421
12496
+
Lys
TTT
[ENA]
¡û
>W1810584144
QEYH01000003
Campylobacterota
Aliarcobacter skirrowii 17-1201-4 [QEYH]
135435
135360
-
Lys
TTT
[ENA]
¡û
>W1610584502
LCSL01000004
Campylobacterota
Arcobacter porcinus [LCSL]
85406
85331
-
Lys
TTT
[ENA]
¡û
>W1610584506
LCSL01000004
Campylobacterota
Arcobacter porcinus [LCSL]
85045
84970
-
Lys
TTT
[ENA]
¡û
>W1610584928
LCUH01000011
Campylobacterota
Aliarcobacter thereius [LCUH]
20399
20324
-
Lys
TTT
[ENA]
¡û
>W1610584932
LCUH01000011
Campylobacterota
Aliarcobacter thereius [LCUH]
20039
19964
-
Lys
TTT
[ENA]
¡û
>W1610584984
LCUJ01000001
Campylobacterota
Aliarcobacter thereius [LCUJ]
77056
77131
+
Lys
TTT
[ENA]
¡û
>W1610586358
LDIR01000001
Campylobacterota
Arcobacter porcinus [LDIR]
1130038
1129963
-
Lys
TTT
[ENA]
¡û
>W1610586362
LDIR01000001
Campylobacterota
Arcobacter porcinus [LDIR]
1129677
1129602
-
Lys
TTT
[ENA]
¡û
>W1610586412
LDIS01000002
Campylobacterota
Aliarcobacter thereius [LDIS]
440235
440160
-
Lys
TTT
[ENA]
¡û
>W1610586416
LDIS01000002
Campylobacterota
Aliarcobacter thereius [LDIS]
439877
439802
-
Lys
TTT
[ENA]
¡û
>W1610896596
LRUZ01000021
Campylobacterota
Aliarcobacter skirrowii [LRUZ]
26719
26794
+
Lys
TTT
[ENA]
¡û
>W1710703719
LCSL01000004
Campylobacterota
Arcobacter porcinus [LCSL]
85406
85331
-
Lys
TTT
[ENA]
¡û
>W1710703723
LCSL01000004
Campylobacterota
Arcobacter porcinus [LCSL]
85045
84970
-
Lys
TTT
[ENA]
¡û
>W1710704119
LCUH01000011
Campylobacterota
Aliarcobacter thereius [LCUH]
20399
20324
-
Lys
TTT
[ENA]
¡û
>W1710704123
LCUH01000011
Campylobacterota
Aliarcobacter thereius [LCUH]
20039
19964
-
Lys
TTT
[ENA]
¡û
>W1710704171
LCUJ01000001
Campylobacterota
Aliarcobacter thereius [LCUJ]
76698
76773
+
Lys
TTT
[ENA]
¡û
>W1710704175
LCUJ01000001
Campylobacterota
Aliarcobacter thereius [LCUJ]
77056
77131
+
Lys
TTT
[ENA]
¡û
>W1710705488
LDIR01000001
Campylobacterota
Arcobacter porcinus [LDIR]
1130038
1129963
-
Lys
TTT
[ENA]
¡û
>W1710705492
LDIR01000001
Campylobacterota
Arcobacter porcinus [LDIR]
1129677
1129602
-
Lys
TTT
[ENA]
¡û
>W1710705542
LDIS01000002
Campylobacterota
Aliarcobacter thereius [LDIS]
440235
440160
-
Lys
TTT
[ENA]
¡û
>W1710705546
LDIS01000002
Campylobacterota
Aliarcobacter thereius [LDIS]
439877
439802
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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