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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.355552 (33 seq.)
>W1711361338
MDLC01000042
Gammaproteobacteria
Candidatus Endobugula sertula [MDLC]
16947
17022
+
Glu
TTC
[ENA]
¡û
>W1711372795
MDTU01000001
Gammaproteobacteria
Piscirickettsia litoralis Y2 [MDTU]
2092804
2092879
+
Glu
TTC
[ENA]
¡û
>W1711372809
MDTU01000001
Gammaproteobacteria
Piscirickettsia litoralis Y2 [MDTU]
2295503
2295428
-
Glu
TTC
[ENA]
¡û
>W1711372812
MDTU01000001
Gammaproteobacteria
Piscirickettsia litoralis Y2 [MDTU]
1760194
1760119
-
Glu
TTC
[ENA]
¡û
>W131239260
BANL01000026
Gammaproteobacteria
Idiomarina sp. 28-8 [BANL]
80143
80068
-
Glu
TTC
[ENA]
¡û
>C171088769
CP019046
Gammaproteobacteria
Halioglobus pacificus RR3-57 [CP019046]
4062334
4062409
+
Glu
TTC
-
¡û
>C011040
AE017340
Gammaproteobacteria
Idiomarina loihiensis L2TR [AE017340]
1903223
1903148
-
Glu
TTC
[Ensembl]
¡û
>w021574
AAVT01000002
Gammaproteobacteria
marine gamma proteobacterium HTCC2143 [AAVT]
64177
64254
+
Glu
TTC
[ENA]
¡û
>w013907
AAOA01000001
Gammaproteobacteria
Congregibacter litoralis KT 71 [AAOA]
190854
190931
+
Glu
TTC
[ENA]
¡û
>WENV180103272
OAPA01012203
[OAPA] marine metagenome; ENVO:00002010
278
203
-
Glu
TTC
[ENA]
¢þ
>WENV180112735
OAPP01089231
[OAPP] marine metagenome; Surface water
398
323
-
Glu
TTC
[ENA]
¢þ
>WENV180241834
OBDI01015218
[OBDI] metagenome; diffuse fluid
270
345
+
Glu
TTC
[ENA]
¢þ
>WENV180360451
OBNU01000002
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
22620
22695
+
Glu
TTC
[ENA]
¢þ
>WENV180376738
OBOM01067368
[OBOM] marine metagenome; Seawater
138
213
+
Glu
TTC
[ENA]
¢þ
>WENV180583287
OCNB01023141
[OCNB] metagenome; diffuse fluid
235
310
+
Glu
TTC
[ENA]
¢þ
>WENV181162625
OEIO01003064
[OEIO] marine metagenome; sea ice
1054
1129
+
Glu
TTC
[ENA]
¢þ
>WENV183617148
OOEE01073739
[OOEE] marine metagenome; sea ice
201
126
-
Glu
TTC
[ENA]
¢þ
>WENV183617492
OOEG01001659
[OOEG] marine metagenome; sea ice
2195
2270
+
Glu
TTC
[ENA]
¢þ
>WENV183624837
OOGE01017685
[OOGE] marine metagenome; sea ice
592
667
+
Glu
TTC
[ENA]
¢þ
>WENV183625743
OOGG01016935
[OOGG] marine metagenome; sea ice
340
415
+
Glu
TTC
[ENA]
¢þ
>C181070987
CP022684
Gammaproteobacteria
Ketobacter alkanivorans GI5 [CP022684]
4818553
4818628
+
Glu
TTC
-
¡û
>C181071012
CP022684
Gammaproteobacteria
Ketobacter alkanivorans GI5 [CP022684]
666365
666290
-
Glu
TTC
-
¡û
>W1910993816
NKXM01000202
Gammaproteobacteria
Sodalis-like symbiont of Philaenus spumarius [NKXM]
630
705
+
Glu
TTC
[ENA]
¡û
>W1910993851
NKXM01000758
Gammaproteobacteria
Sodalis-like symbiont of Philaenus spumarius [NKXM]
1599
1524
-
Glu
TTC
[ENA]
¡û
>W1911585685
PIQC01000001
Gammaproteobacteria
Idiomarina ramblicola R22 [PIQC]
602548
602473
-
Glu
TTC
[ENA]
¡û
>W1911748755
QWEZ01000001
Gammaproteobacteria
Aestuariirhabdus litorea GTF13 [QWEZ]
1471849
1471774
-
Glu
TTC
[ENA]
¡û
>W1911748757
QWEZ01000001
Gammaproteobacteria
Aestuariirhabdus litorea GTF13 [QWEZ]
1471503
1471428
-
Glu
TTC
[ENA]
¡û
>W1911748760
QWEZ01000001
Gammaproteobacteria
Aestuariirhabdus litorea GTF13 [QWEZ]
1471198
1471123
-
Glu
TTC
[ENA]
¡û
>W1810609598
QGUA01000007
Gammaproteobacteria
Idiomarina loihiensis H2.2 [QGUA]
139635
139560
-
Glu
TTC
[ENA]
¡û
>W1810785246
QRBK01000005
Gammaproteobacteria
Idiomarina abyssalis 017G.2 [QRBK]
48620
48545
-
Glu
TTC
[ENA]
¡û
>C161108660
LN999833
Gammaproteobacteria
Candidatus Doolittlea endobia [LN999833]
526793
526718
-
Glu
TTC
[Ensembl]
¡û
>C131016288
CP005964
Gammaproteobacteria
Idiomarina loihiensis GSL 199 [CP005964]
1903338
1903263
-
Glu
TTC
[Ensembl]
¡û
>W1710577934
FPBE01000001
Gammaproteobacteria
Idiomarina abyssalis [FPBE]
984655
984580
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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