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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.355840 (18 seq.)
>W1710892678
LNDZ01000022
Betaproteobacteria
Betaproteobacteria bacterium Ga0074130 [LNDZ]
84029
83954
-
Val
TAC
[ENA]
¡û
>W1710934505
LOJJ01000003
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
296824
296899
+
Val
TAC
[ENA]
¡û
>W1711625772
MPIY01000002
Betaproteobacteria
Polynucleobacter sphagniphilus MWH-Weng1-1 [MPIY]
160524
160599
+
Val
TAC
[ENA]
¡û
>W1712077032
NGUO01000010
Betaproteobacteria
Polynucleobacter aenigmaticus MWH-K35W1 [NGUO]
78664
78589
-
Val
TAC
[ENA]
¡û
>C018604
CP000267
Betaproteobacteria
Rhodoferax ferrireducens T118 DSM 15236 [CP000267]
2462673
2462748
+
Val
TAC
[Ensembl]
¡û
>w008240
AAJK01000036
Betaproteobacteria
Rhodoferax ferrireducens DSM 15236 [AAJK]
2702
2777
+
Val
TAC
[ENA]
¡û
>WENV002016
AACY020056743
Marine microbial communities from Global Ocean Sampling (GOS)
1129
1204
+
Val
TAC
[ENA]
>C181187698
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
808372
808297
-
Val
TAC
-
¡û
>C181218875
LT606946
Betaproteobacteria
Polynucleobacter necessarius [LT606946]
859956
860031
+
Val
TAC
-
¡û
>C181218929
LT606947
Betaproteobacteria
Polynucleobacter necessarius [LT606947]
611679
611604
-
Val
TAC
-
¡û
>W1911279044
NTGB01000001
Betaproteobacteria
Polynucleobacter rarus MT-CBb6A5 [NTGB]
1075019
1075094
+
Val
TAC
[ENA]
¡û
>W1911490739
OANS01000002
Betaproteobacteria
Polynucleobacter meluiroseus AP-Melu-1000-B4 [OANS]
280816
280741
-
Val
TAC
[ENA]
¡û
>W1810699155
QMCG01000001
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-UK1W16 [QMCG]
1232482
1232407
-
Val
TAC
[ENA]
¡û
>C151000928
AP012547
Betaproteobacteria
Sulfuritalea hydrogenivorans sk43H DSM 22779 [AP012547]
2538225
2538150
-
Val
TAC
[Ensembl]
¡û
>C151025653
CP007501
Betaproteobacteria
Polynucleobacter duraquae MWH-MoK4 [CP007501]
1011129
1011204
+
Val
TAC
[Ensembl]
¡û
>W1610752944
LNDZ01000022
Betaproteobacteria
Betaproteobacteria bacterium Ga0074130 [LNDZ]
84029
83954
-
Val
TAC
[ENA]
¡û
>W1610792036
LOJJ01000003
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
296824
296899
+
Val
TAC
[ENA]
¡û
>W1710605900
FWXJ01000013
Betaproteobacteria
Polynucleobacter kasalickyi VK13 [FWXJ]
42814
42739
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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