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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.355923 (36 seq.)
>W1710785309
LJHT01000020
Betaproteobacteria
beta proteobacterium AAP51 [LJHT]
17746
17671
-
Glu
TTC
[ENA]
¡û
>W1710893433
LNET01000067
Betaproteobacteria
Burkholderiales bacterium Ga0077543 [LNET]
9556
9631
+
Glu
TTC
[ENA]
¡û
>W1711386286
MEFD01000021
Betaproteobacteria
Rubrivivax sp. SCN 71-131 [MEFD]
111328
111403
+
Glu
TTC
[ENA]
¡û
>W1711387271
MEGM01000010
Betaproteobacteria
Rubrivivax sp. SCN 70-15 [MEGM]
24777
24852
+
Glu
TTC
[ENA]
¡û
>W131178117
ARLH01000092
Betaproteobacteria
Caldimonas manganoxidans ATCC BAA-369 [ARLH]
167904
167979
+
Glu
TTC
[ENA]
¡û
>W131214619
ATUI01000011
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 [ATUI]
162825
162750
-
Glu
TTC
[ENA]
¡û
>W131214632
ATUI01000030
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 [ATUI]
338
263
-
Glu
TTC
[ENA]
¡û
>W131214633
ATUI01000030
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 [ATUI]
163
88
-
Glu
TTC
[ENA]
¡û
>W131236675
AUMO01000016
Betaproteobacteria
Azohydromonas australica DSM 1124 [AUMO]
218722
218797
+
Glu
TTC
[ENA]
¡û
>W131236677
AUMO01000016
Betaproteobacteria
Azohydromonas australica DSM 1124 [AUMO]
219002
219077
+
Glu
TTC
[ENA]
¡û
>WENV181414165
OGCL01000069
[OGCL] hot springs metagenome; Hot spring water
73928
73853
-
Glu
TTC
[ENA]
¢þ
>WENV170019939
BBPE01001647
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
5318
5393
+
Glu
TTC
[ENA]
¢þ
>WENV170651333
JRYF01007144
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
199
124
-
Glu
TTC
[ENA]
¢þ
>C191182054
CP040709
Betaproteobacteria
Inhella inkyongensis IMCC1713 [CP040709]
2028502
2028577
+
Glu
TTC
-
¡û
>C191182057
CP040709
Betaproteobacteria
Inhella inkyongensis IMCC1713 [CP040709]
2028970
2029045
+
Glu
TTC
-
¡û
>W1911701441
QNUI01000063
Betaproteobacteria
Azohydromonas sediminis YIM 73032 [QNUI]
16649
16574
-
Glu
TTC
[ENA]
¡û
>W1810666674
QJOU01000112
Betaproteobacteria
Piscinibacter caeni MQ-18 [QJOU]
9759
9684
-
Glu
TTC
[ENA]
¡û
>W1810762740
QQAP01000002
Betaproteobacteria
Caldimonas thermodepolymerans DSM 15344 [QQAP]
414277
414352
+
Glu
TTC
[ENA]
¡û
>W1810884629
QUMT01000002
Betaproteobacteria
Roseateles depolymerans DSM 11813 [QUMT]
714019
714094
+
Glu
TTC
[ENA]
¡û
>W1810884632
QUMT01000002
Betaproteobacteria
Roseateles depolymerans DSM 11813 [QUMT]
714572
714647
+
Glu
TTC
[ENA]
¡û
>C151003070
AP014683
Betaproteobacteria
Burkholderiales bacterium GJ-E10 [AP014683]
217419
217494
+
Glu
TTC
[Ensembl]
¡û
>C151081655
CP011371
Betaproteobacteria
Caldimonas brevitalea DSM 7029 [CP011371]
1817460
1817535
+
Glu
TTC
[Ensembl]
¡û
>C151081657
CP011371
Betaproteobacteria
Caldimonas brevitalea DSM 7029 [CP011371]
1817731
1817806
+
Glu
TTC
[Ensembl]
¡û
>W11150905
AEWG01000008
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 [AEWG]
24887
24812
-
Glu
TTC
[ENA]
¡û
>W11150906
AEWG01000008
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 [AEWG]
24712
24637
-
Glu
TTC
[ENA]
¡û
>C121001092
AP012320
Betaproteobacteria
Rubrivivax gelatinosus IL144 [AP012320]
1316436
1316511
+
Glu
TTC
[Ensembl]
¡û
>C121001093
AP012320
Betaproteobacteria
Rubrivivax gelatinosus IL144 [AP012320]
1316606
1316681
+
Glu
TTC
[Ensembl]
¡û
>W1610070244
BCTC01000029
Betaproteobacteria
Azohydromonas lata NBRC 102462 [BCTC]
267
192
-
Glu
TTC
[ENA]
¡û
>W1610074117
BCWK01000003
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
89271
89196
-
Glu
TTC
[ENA]
¡û
>W121060115
AJFF01000337
Betaproteobacteria
Rubrivivax gelatinosus CBS [AJFF]
5181
5256
+
Glu
TTC
[ENA]
¡û
>W1610649115
LJHT01000020
Betaproteobacteria
beta proteobacterium AAP51 [LJHT]
17746
17671
-
Glu
TTC
[ENA]
¡û
>W1610753699
LNET01000067
Betaproteobacteria
Burkholderiales bacterium Ga0077543 [LNET]
9556
9631
+
Glu
TTC
[ENA]
¡û
>W1710067617
BCTC01000029
Betaproteobacteria
Azohydromonas lata NBRC 102462 [BCTC]
267
192
-
Glu
TTC
[ENA]
¡û
>W1710071235
BCWK01000003
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
89271
89196
-
Glu
TTC
[ENA]
¡û
>W1710544470
FOAV01000005
Betaproteobacteria
Roseateles sp. YR242 [FOAV]
167872
167797
-
Glu
TTC
[ENA]
¡û
>W1710544473
FOAV01000005
Betaproteobacteria
Roseateles sp. YR242 [FOAV]
167352
167277
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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