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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.35617 (9 seq.)
>C171074096
CP018154
Alphaproteobacteria
Sphingorhabdus lutea LPB0140 [CP018154]
1627142
1627053
-
Ser
TGA
-
¡û
>WENV170121270
CENL01094544
[CENL] marine metagenome genome assembly TARA_025_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
579
668
+
Ser
TGA
[ENA]
¢þ
>C181072830
CP022889
Alphaproteobacteria
Tsuneonella mangrovi C9-11 [CP022889]
201053
200964
-
Ser
TGA
-
¡û
>C181220312
LT702999
Alphaproteobacteria
Erythrobacter sp. Alg231-14 [LT702999, LT703000]
2536620
2536709
+
Ser
TGA
-
¡û
>C191002593
AP018498
Alphaproteobacteria
Altererythrobacter sp. B11 [AP018498]
2370074
2369985
-
Ser
TGA
-
¡û
>W141700099
JMIV01000002
Alphaproteobacteria
Erythrobacter sp. JL475 [JMIV]
494262
494173
-
Ser
TGA
[ENA]
¡û
>W1910822168
MWMO01000014
Alphaproteobacteria
Novosphingobium sp. PC22D [MWMO]
131542
131631
+
Ser
TGA
[ENA]
¡û
>W1810120392
PHSO01000004
Alphaproteobacteria
Tsuneonella flava MS1-4 [PHSO]
201423
201334
-
Ser
TGA
[ENA]
¡û
>C151082937
CP011452
Alphaproteobacteria
Croceibacterium atlanticum 26DY36 [CP011452]
554559
554470
-
Ser
TGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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