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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.356355 (125 seq.)
>W131228259
AUFU01000001
Bacillota
Selenomonas artemidis DSM 19719 [AUFU]
175966
175891
-
Met
CAT
[ENA]
¡û
>C171055677
CP017042
Bacillota
Selenomonas sp. oral taxon 920 W5150 [CP017042]
791029
791104
+
Met
CAT
-
¡û
>C171055679
CP017042
Bacillota
Selenomonas sp. oral taxon 920 W5150 [CP017042]
791210
791285
+
Met
CAT
-
¡û
>WENV180002069
FLNX01004598
[FLNX] bioreactor metagenome; Moose rumen
265
190
-
fMet
CAT
[ENA]
¢þ
>WENV180008425
FLSB01027670
[FLSB] metagenome; saliva
96
171
+
fMet
CAT
[ENA]
¢þ
>WENV180008427
FLSB01027670
[FLSB] metagenome; saliva
278
353
+
fMet
CAT
[ENA]
¢þ
>WENV180498848
OCAG01003325
[OCAG] human gut metagenome; faeces
1829
1904
+
fMet
CAT
[ENA]
¢þ
>WENV180720874
ODGJ01239006
[ODGJ] human metagenome; G_DNA_Tongue dorsum
142
67
-
fMet
CAT
[ENA]
¢þ
>WENV180724984
ODGR01006862
[ODGR] human metagenome; G_DNA_Tongue dorsum
2494
2419
-
fMet
CAT
[ENA]
¢þ
>WENV180731689
ODGW01006768
[ODGW] human metagenome; G_DNA_Supragingival plaque
426
501
+
fMet
CAT
[ENA]
¢þ
>WENV180732929
ODGY01008430
[ODGY] human metagenome; G_DNA_Supragingival plaque
1793
1718
-
fMet
CAT
[ENA]
¢þ
>WENV180751803
ODHS01178328
[ODHS] human metagenome; G_DNA_Supragingival plaque
111
186
+
fMet
CAT
[ENA]
¢þ
>WENV180757998
ODHW01004130
[ODHW] human metagenome; G_DNA_Tongue dorsum
4950
4875
-
fMet
CAT
[ENA]
¢þ
>WENV180758203
ODHW01010652
[ODHW] human metagenome; G_DNA_Tongue dorsum
1446
1521
+
fMet
CAT
[ENA]
¢þ
>WENV180764702
ODIB01000358
[ODIB] human metagenome; G_DNA_Supragingival plaque
10866
10791
-
fMet
CAT
[ENA]
¢þ
>WENV180764704
ODIB01000358
[ODIB] human metagenome; G_DNA_Supragingival plaque
10680
10605
-
fMet
CAT
[ENA]
¢þ
>WENV180768875
ODIG01021524
[ODIG] human metagenome; G_DNA_Tongue dorsum
729
804
+
fMet
CAT
[ENA]
¢þ
>WENV180787854
ODIS01019196
[ODIS] human metagenome; G_DNA_Supragingival plaque
2186
2111
-
fMet
CAT
[ENA]
¢þ
>WENV180790613
ODIT01023165
[ODIT] human metagenome; G_DNA_Tongue dorsum
109
184
+
fMet
CAT
[ENA]
¢þ
>WENV180793108
ODIW01008413
[ODIW] human metagenome; G_DNA_Tongue dorsum
1201
1126
-
fMet
CAT
[ENA]
¢þ
>WENV180793110
ODIW01008413
[ODIW] human metagenome; G_DNA_Tongue dorsum
1019
944
-
fMet
CAT
[ENA]
¢þ
>WENV180804505
ODJG01004296
[ODJG] human metagenome; G_DNA_Supragingival plaque
77
2
-
fMet
CAT
[ENA]
¢þ
>WENV180805250
ODJG01118029
[ODJG] human metagenome; G_DNA_Supragingival plaque
77
152
+
fMet
CAT
[ENA]
¢þ
>WENV180813090
ODJO01000024
[ODJO] human metagenome; G_DNA_Supragingival plaque
60279
60354
+
fMet
CAT
[ENA]
¢þ
>WENV180813317
ODJO01000344
[ODJO] human metagenome; G_DNA_Supragingival plaque
17296
17371
+
fMet
CAT
[ENA]
¢þ
>WENV180813319
ODJO01000344
[ODJO] human metagenome; G_DNA_Supragingival plaque
17482
17557
+
fMet
CAT
[ENA]
¢þ
>WENV180813831
ODJO01003015
[ODJO] human metagenome; G_DNA_Supragingival plaque
1660
1585
-
fMet
CAT
[ENA]
¢þ
>WENV180815724
ODJP01001379
[ODJP] human metagenome; G_DNA_Tongue dorsum
9922
9997
+
fMet
CAT
[ENA]
¢þ
>WENV180815726
ODJP01001379
[ODJP] human metagenome; G_DNA_Tongue dorsum
10104
10179
+
fMet
CAT
[ENA]
¢þ
>WENV180823449
ODJW01032487
[ODJW] human metagenome; G_DNA_Supragingival plaque
593
518
-
fMet
CAT
[ENA]
¢þ
>WENV180833355
ODKC01034928
[ODKC] human metagenome; G_DNA_Supragingival plaque
146
71
-
fMet
CAT
[ENA]
¢þ
>WENV180836147
ODKE01050527
[ODKE] human metagenome; G_DNA_Supragingival plaque
245
170
-
fMet
CAT
[ENA]
¢þ
>WENV180843680
ODKN01007931
[ODKN] human metagenome; G_DNA_Supragingival plaque
3035
3110
+
fMet
CAT
[ENA]
¢þ
>WENV180844114
ODKN01037365
[ODKN] human metagenome; G_DNA_Supragingival plaque
60
135
+
fMet
CAT
[ENA]
¢þ
>WENV180845795
ODKT01002209
[ODKT] human metagenome; G_DNA_Supragingival plaque
10362
10437
+
fMet
CAT
[ENA]
¢þ
>WENV180845797
ODKT01002209
[ODKT] human metagenome; G_DNA_Supragingival plaque
10548
10623
+
fMet
CAT
[ENA]
¢þ
>WENV180859482
ODLD01000894
[ODLD] human metagenome; G_DNA_Supragingival plaque
4724
4649
-
fMet
CAT
[ENA]
¢þ
>WENV180859484
ODLD01000894
[ODLD] human metagenome; G_DNA_Supragingival plaque
4538
4463
-
fMet
CAT
[ENA]
¢þ
>WENV180862083
ODLE01032198
[ODLE] human metagenome; G_DNA_Tongue dorsum
733
808
+
fMet
CAT
[ENA]
¢þ
>WENV180879524
ODLZ01000844
[ODLZ] human metagenome; G_DNA_Tongue dorsum
16567
16492
-
fMet
CAT
[ENA]
¢þ
>WENV180879526
ODLZ01000844
[ODLZ] human metagenome; G_DNA_Tongue dorsum
16385
16310
-
fMet
CAT
[ENA]
¢þ
>WENV180883416
ODMC01004957
[ODMC] human metagenome; G_DNA_Tongue dorsum
4026
3951
-
fMet
CAT
[ENA]
¢þ
>WENV180883418
ODMC01004957
[ODMC] human metagenome; G_DNA_Tongue dorsum
3844
3769
-
fMet
CAT
[ENA]
¢þ
>WENV180888512
ODMN01001401
[ODMN] human metagenome; G_DNA_Supragingival plaque
64
139
+
fMet
CAT
[ENA]
¢þ
>WENV180889923
ODMN01252082
[ODMN] human metagenome; G_DNA_Supragingival plaque
4
79
+
fMet
CAT
[ENA]
¢þ
>WENV180901319
ODOJ01136327
[ODOJ] human metagenome; G_DNA_Tongue dorsum
174
99
-
fMet
CAT
[ENA]
¢þ
>WENV180944261
ODUC01011894
[ODUC] human metagenome; G_DNA_Supragingival plaque
3049
3124
+
fMet
CAT
[ENA]
¢þ
>WENV180944474
ODUC01018945
[ODUC] human metagenome; G_DNA_Supragingival plaque
2443
2518
+
fMet
CAT
[ENA]
¢þ
>WENV180968961
ODUT01146125
[ODUT] human metagenome; G_DNA_Tongue dorsum
64
139
+
fMet
CAT
[ENA]
¢þ
>WENV180980010
ODVC01040004
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
77
2
-
fMet
CAT
[ENA]
¢þ
>WENV180981545
ODVE01030058
[ODVE] human metagenome; G_DNA_Supragingival plaque
1064
989
-
fMet
CAT
[ENA]
¢þ
>WENV180982367
ODVF01000001
[ODVF] human metagenome; G_DNA_Supragingival plaque
266150
266225
+
fMet
CAT
[ENA]
¢þ
>WENV180982888
ODVF01001305
[ODVF] human metagenome; G_DNA_Supragingival plaque
12259
12184
-
fMet
CAT
[ENA]
¢þ
>WENV181003673
ODVX01022927
[ODVX] human metagenome; G_DNA_Supragingival plaque
596
671
+
fMet
CAT
[ENA]
¢þ
>WENV181008945
ODWE01020667
[ODWE] human metagenome; G_DNA_Supragingival plaque
773
698
-
fMet
CAT
[ENA]
¢þ
>WENV181008947
ODWE01020667
[ODWE] human metagenome; G_DNA_Supragingival plaque
587
512
-
fMet
CAT
[ENA]
¢þ
>WENV181011646
ODWI01070539
[ODWI] human metagenome; G_DNA_Tongue dorsum
301
226
-
fMet
CAT
[ENA]
¢þ
>WENV181016909
ODWR01012389
[ODWR] human metagenome; G_DNA_Tongue dorsum
947
1022
+
fMet
CAT
[ENA]
¢þ
>WENV181018729
ODWU01000047
[ODWU] human metagenome; G_DNA_Supragingival plaque
105658
105733
+
fMet
CAT
[ENA]
¢þ
>WENV181018731
ODWU01000047
[ODWU] human metagenome; G_DNA_Supragingival plaque
105844
105919
+
fMet
CAT
[ENA]
¢þ
>WENV181032984
ODXN01001805
[ODXN] human metagenome; G_DNA_Tongue dorsum
10981
10906
-
fMet
CAT
[ENA]
¢þ
>WENV181033040
ODXN01002114
[ODXN] human metagenome; G_DNA_Tongue dorsum
9631
9706
+
fMet
CAT
[ENA]
¢þ
>WENV181063230
ODYP01000241
[ODYP] human metagenome; G_DNA_Supragingival plaque
62
137
+
fMet
CAT
[ENA]
¢þ
>WENV181065153
ODYP01322633
[ODYP] human metagenome; G_DNA_Supragingival plaque
4
79
+
fMet
CAT
[ENA]
¢þ
>WENV181075609
OEAP01000066
[OEAP] human metagenome; G_DNA_Supragingival plaque
45540
45615
+
fMet
CAT
[ENA]
¢þ
>WENV181076265
OEAP01003145
[OEAP] human metagenome; G_DNA_Supragingival plaque
3438
3363
-
fMet
CAT
[ENA]
¢þ
>WENV181076267
OEAP01003145
[OEAP] human metagenome; G_DNA_Supragingival plaque
3252
3177
-
fMet
CAT
[ENA]
¢þ
>WENV181080224
OEAS01033648
[OEAS] human metagenome; G_DNA_Supragingival plaque
1880
1955
+
fMet
CAT
[ENA]
¢þ
>WENV181082028
OEAS01557036
[OEAS] human metagenome; G_DNA_Supragingival plaque
4
79
+
fMet
CAT
[ENA]
¢þ
>WENV181084060
OEAV01056036
[OEAV] human metagenome; G_DNA_Supragingival plaque
205
280
+
fMet
CAT
[ENA]
¢þ
>WENV181087666
OEAY01112519
[OEAY] human metagenome; G_DNA_Tongue dorsum
161
236
+
fMet
CAT
[ENA]
¢þ
>WENV181094731
OEBY01000889
[OEBY] human metagenome; G_DNA_Tongue dorsum
15752
15827
+
fMet
CAT
[ENA]
¢þ
>WENV181094733
OEBY01000889
[OEBY] human metagenome; G_DNA_Tongue dorsum
15934
16009
+
fMet
CAT
[ENA]
¢þ
>WENV181103615
OECV01000562
[OECV] human metagenome; G_DNA_Throat
3898
3823
-
fMet
CAT
[ENA]
¢þ
>WENV181105551
OEED01007258
[OEED] human metagenome; G_DNA_Tongue dorsum
3656
3731
+
fMet
CAT
[ENA]
¢þ
>WENV181121008
OEFL01000074
[OEFL] human metagenome; G_DNA_Supragingival plaque
43771
43846
+
fMet
CAT
[ENA]
¢þ
>WENV181122134
OEFL01092991
[OEFL] human metagenome; G_DNA_Supragingival plaque
5
80
+
fMet
CAT
[ENA]
¢þ
>WENV181136937
OEGI01153067
[OEGI] human metagenome; G_DNA_Supragingival plaque
9
84
+
fMet
CAT
[ENA]
¢þ
>WENV181137385
OEGJ01002595
[OEGJ] human metagenome; G_DNA_Supragingival plaque
6139
6064
-
fMet
CAT
[ENA]
¢þ
>WENV181143607
OEHM01002950
[OEHM] human metagenome; G_DNA_Supragingival plaque
165
240
+
fMet
CAT
[ENA]
¢þ
>WENV181150843
OEHW01008769
[OEHW] human metagenome; G_DNA_Tongue dorsum
2168
2093
-
fMet
CAT
[ENA]
¢þ
>WENV181152647
OEIA01003706
[OEIA] human metagenome; G_DNA_Supragingival plaque
4546
4471
-
fMet
CAT
[ENA]
¢þ
>WENV181152649
OEIA01003706
[OEIA] human metagenome; G_DNA_Supragingival plaque
4360
4285
-
fMet
CAT
[ENA]
¢þ
>WENV181157701
OEIG01022213
[OEIG] human metagenome; G_DNA_Hard palate
114
39
-
fMet
CAT
[ENA]
¢þ
>WENV181160361
OEIK01006628
[OEIK] human metagenome; G_DNA_Supragingival plaque
3416
3341
-
fMet
CAT
[ENA]
¢þ
>WENV181160565
OEIK01014425
[OEIK] human metagenome; G_DNA_Supragingival plaque
77
2
-
fMet
CAT
[ENA]
¢þ
>WENV181176928
OEJR01076458
[OEJR] human metagenome; G_DNA_Saliva
256
181
-
fMet
CAT
[ENA]
¢þ
>WENV181178360
OEJS01181185
[OEJS] human metagenome; G_DNA_Supragingival plaque
5
80
+
fMet
CAT
[ENA]
¢þ
>WENV181182893
OEJV01069698
[OEJV] human metagenome; G_DNA_Supragingival plaque
49
124
+
fMet
CAT
[ENA]
¢þ
>W141146133
AWVG01000075
Bacillota
Selenomonas sp. oral taxon 892 oral taxon 892 str. F0426 [AWVG]
9149
9224
+
Met
CAT
[ENA]
¡û
>WENV181675561
OGOP01006841
[OGOP] human gut metagenome; faeces
159
84
-
fMet
CAT
[ENA]
¢þ
>WENV182327053
OHYV01014300
[OHYV] human gut metagenome; feces
590
515
-
fMet
CAT
[ENA]
¢þ
>WENV182510449
OIWK01002143
[OIWK] human gut metagenome; faeces
103
178
+
fMet
CAT
[ENA]
¢þ
>WENV182624577
OJKO01007520
[OJKO] metagenome; faeces
1844
1769
-
fMet
CAT
[ENA]
¢þ
>WENV183027924
OLFV01000573
[OLFV] human gut metagenome; faeces
26364
26439
+
fMet
CAT
[ENA]
¢þ
>WENV183509373
OMHI01000302
[OMHI] human oral metagenome; human oral
1495
1420
-
fMet
CAT
[ENA]
¢þ
>WENV183510336
OMHN01006690
[OMHN] human oral metagenome; human oral
643
568
-
fMet
CAT
[ENA]
¢þ
>W141563606
JIAC01000001
Bacillota
Selenomonas ruminantium AC2024 [JIAC]
1297545
1297620
+
Met
CAT
[ENA]
¡û
>W141703513
JMME01000001
Bacillota
Selenomonas sp. AE3005 [JMME]
48428
48503
+
Met
CAT
[ENA]
¡û
>W141703574
JMME01000016
Bacillota
Selenomonas sp. AE3005 [JMME]
54033
53958
-
Met
CAT
[ENA]
¡û
>W09127159
ACKT01000026
Bacillota
Selenomonas noxia ATCC 43541 [ACKT]
16593
16518
-
Met
CAT
[ENA]
¡û
>W09127161
ACKT01000026
Bacillota
Selenomonas noxia ATCC 43541 [ACKT]
16407
16332
-
Met
CAT
[ENA]
¡û
>W1911534767
OLMJ01000004
Bacillota
Selenomonas massiliensis Marseille-P4036 [OLMJ]
351269
351194
-
Met
CAT
[ENA]
¡û
>W1911534769
OLMJ01000004
Bacillota
Selenomonas massiliensis Marseille-P4036 [OLMJ]
351084
351009
-
Met
CAT
[ENA]
¡û
>W1810789824
QRHE01000009
Bacillota
Mitsuokella multacida AM25-21AC [QRHE]
100709
100634
-
Met
CAT
[ENA]
¡û
>W1810802462
QRQA01000012
Bacillota
Mitsuokella sp. AF33-22 [QRQA]
19455
19380
-
Met
CAT
[ENA]
¡û
>W1810808244
QRVW01000023
Bacillota
Mitsuokella sp. AF21-1AC [QRVW]
24905
24980
+
Met
CAT
[ENA]
¡û
>C151090514
CP012071
Bacillota
Selenomonas sp. oral taxon 478 F0592 [CP012071]
1563439
1563514
+
Met
CAT
-
¡û
>C151090516
CP012071
Bacillota
Selenomonas sp. oral taxon 478 F0592 [CP012071]
1563621
1563696
+
Met
CAT
-
¡û
>W11133186
AECV01000023
Bacillota
Selenomonas artemidis F0399 [AECV]
11975
12050
+
Met
CAT
[ENA]
¡û
>W11163275
AFHQ01000047
Bacillota
Centipeda periodontii DSM 2778 [AFHQ]
111830
111755
-
Met
CAT
[ENA]
¡û
>W11163277
AFHQ01000047
Bacillota
Centipeda periodontii DSM 2778 [AFHQ]
111644
111569
-
Met
CAT
[ENA]
¡û
>C161069297
CP014239
Bacillota
Selenomonas sp. oral taxon 136 F0591 [CP014239]
489568
489493
-
Met
CAT
[Ensembl]
¡û
>W121001422
ADGH01000016
Bacillota
Selenomonas noxia F0398 [ADGH]
10499
10424
-
Met
CAT
[ENA]
¡û
>W121001424
ADGH01000016
Bacillota
Selenomonas noxia F0398 [ADGH]
10313
10238
-
Met
CAT
[ENA]
¡û
>W121111738
ALJR01000048
Bacillota
Selenomonas sp. FOBRC9 [ALJR]
23795
23720
-
Met
CAT
[ENA]
¡û
>W121112125
ALKG01000038
Bacillota
Selenomonas sp. FOBRC6 [ALKG]
13373
13448
+
Met
CAT
[ENA]
¡û
>W121112138
ALKG01000093
Bacillota
Selenomonas sp. FOBRC6 [ALKG]
9
84
+
Met
CAT
[ENA]
¡û
>WENV082560
BAAV01017999
Gut microbiome of Human (healthy human sample F1-T, Adult, Female)
318
241
-
Met
CAT
[ENA]
>W1710516326
FNCM01000022
Bacillota
Selenomonas ruminantium [FNCM]
6009
6084
+
Met
CAT
[ENA]
¡û
>W1710525570
FNJQ01000022
Bacillota
Selenomonas ruminantium [FNJQ]
62578
62503
-
Met
CAT
[ENA]
¡û
>W1710532337
FNQG01000003
Bacillota
Selenomonas ruminantium [FNQG]
70130
70055
-
Met
CAT
[ENA]
¡û
>W1710556023
FOJX01000002
Bacillota
Selenomonas ruminantium [FOJX]
411391
411466
+
Met
CAT
[ENA]
¡û
>W1710564309
FOQK01000014
Bacillota
Selenomonas ruminantium [FOQK]
56732
56807
+
Met
CAT
[ENA]
¡û
>W1710564310
FOQK01000014
Bacillota
Selenomonas ruminantium [FOQK]
56847
56922
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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