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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.356475 (87 seq.)
>W1710939176
LONM01000043
Gammaproteobacteria
Escherichia coli [LONM]
37769
37695
-
Arg
CCT
[ENA]
¡û
>W1710940774
LOOH01000031
Gammaproteobacteria
Escherichia coli [LOOH]
20351
20277
-
Arg
CCT
[ENA]
¡û
>W1710945020
LORE01000019
Gammaproteobacteria
Escherichia coli [LORE]
7119
7193
+
Arg
CCT
[ENA]
¡û
>W1710945065
LORF01000001
Gammaproteobacteria
Escherichia coli [LORF]
120005
120079
+
Arg
CCT
[ENA]
¡û
>W1711037403
LRKE01000165
Gammaproteobacteria
Escherichia coli [LRKE]
38232
38158
-
Arg
CCT
[ENA]
¡û
>W1711042806
LRLY01000037
Gammaproteobacteria
Escherichia coli [LRLY]
14377
14451
+
Arg
CCT
[ENA]
¡û
>W1711064508
LSAP01000072
Gammaproteobacteria
Escherichia coli [LSAP]
44758
44832
+
Arg
CCT
[ENA]
¡û
>W1711207395
LXFJ01000034
Gammaproteobacteria
Escherichia coli [LXFJ]
41063
40989
-
Arg
CCT
[ENA]
¡û
>C171035610
CP015113
Gammaproteobacteria
Kosakonia radicincitans GXGL-4A [CP015113]
3546335
3546409
+
Arg
CCT
-
¡û
>C171071455
CP018016
Gammaproteobacteria
Kosakonia radicincitans DSM 16656 [CP018016]
1629747
1629673
-
Arg
CCT
-
¡û
>WENV180404052
OBRT01101785
[OBRT] human gut metagenome; ENVO:feces
196
122
-
Arg
CCT
[ENA]
¢þ
>WENV180491649
OBZV01028741
[OBZV] human gut metagenome; faeces
522
448
-
Arg
CCT
[ENA]
¢þ
>W141049755
AMUN01000124
Gammaproteobacteria
Escherichia coli 3006 [AMUN]
3424
3498
+
Arg
CCT
[ENA]
¡û
>WENV180829689
ODKA01322541
[ODKA] human metagenome; G_DNA_Stool
25
99
+
Arg
CCT
[ENA]
¢þ
>WENV181216844
OFCG01000454
[OFCG] metagenome; Human gut stool
11551
11477
-
Arg
CCT
[ENA]
¢þ
>WENV181424619
OGCP01002134
[OGCP] metagenome; Human gut stool
2675
2749
+
Arg
CCT
[ENA]
¢þ
>WENV181463612
OGEO01010551
[OGEO] metagenome; Human gut stool
571
497
-
Arg
CCT
[ENA]
¢þ
>WENV181592053
OGKR01000662
[OGKR] metagenome; Human gut stool
607
533
-
Arg
CCT
[ENA]
¢þ
>WENV182204977
OHPR01032605
[OHPR] human gut metagenome; feces
430
356
-
Arg
CCT
[ENA]
¢þ
>WENV182347567
OIAX01002495
[OIAX] human gut metagenome; feces
3
77
+
Arg
CCT
[ENA]
¢þ
>WENV182402133
OIES01001039
[OIES] human gut metagenome; human gut
6309
6383
+
Arg
CCT
[ENA]
¢þ
>WENV182410938
OIFN01000093
[OIFN] human gut metagenome; stool
45846
45918
+
Arg
CCT
[ENA]
¢þ
>WENV182418137
OIGF01006599
[OIGF] human gut metagenome; human gut
743
669
-
Arg
CCT
[ENA]
¢þ
>WENV182487281
OIRV01003437
[OIRV] human gut metagenome; human gut
119
45
-
Arg
CCT
[ENA]
¢þ
>WENV182515974
OIWN01006879
[OIWN] human gut metagenome; faeces
1372
1446
+
Arg
CCT
[ENA]
¢þ
>WENV182535158
OIXG01008170
[OIXG] human gut metagenome; faeces
1271
1197
-
Arg
CCT
[ENA]
¢þ
>WENV182597508
OJJB01000252
[OJJB] metagenome; faeces
1312
1384
+
Arg
CCT
[ENA]
¢þ
>WENV182837675
OKGL01000084
[OKGL] human gut metagenome; human gut
7948
7876
-
Arg
CCT
[ENA]
¢þ
>WENV182851357
OKLL01000663
[OKLL] human gut metagenome; human gut
3406
3480
+
Arg
CCT
[ENA]
¢þ
>WENV182938091
OKVD01000250
[OKVD] human gut metagenome; human gut
17271
17197
-
Arg
CCT
[ENA]
¢þ
>WENV182950149
OKVR01000171
[OKVR] human gut metagenome; human gut
17270
17196
-
Arg
CCT
[ENA]
¢þ
>WENV182951924
OKVV01000400
[OKVV] human gut metagenome; human gut
10150
10224
+
Arg
CCT
[ENA]
¢þ
>WENV182952319
OKVW01000099
[OKVW] human gut metagenome; human gut
28152
28226
+
Arg
CCT
[ENA]
¢þ
>WENV182958512
OKWH01015910
[OKWH] human gut metagenome; human gut
752
678
-
Arg
CCT
[ENA]
¢þ
>WENV183000587
OLCF01004102
[OLCF] human gut metagenome; human gut
186
260
+
Arg
CCT
[ENA]
¢þ
>WENV183570787
OOCD01010713
[OOCD] human gut metagenome; human gut
2761
2835
+
Arg
CCT
[ENA]
¢þ
>W141406618
JDYJ01000018
Gammaproteobacteria
Kosakonia radicincitans UMEnt01/12 [JDYJ]
109164
109090
-
Arg
CCT
[ENA]
¡û
>C181198664
CP031282
Gammaproteobacteria
Escherichia fergusonii 40A [CP031282]
2268385
2268459
+
Arg
CCT
-
¡û
>C09105966
CU928158
Gammaproteobacteria
Escherichia fergusonii ATCC 35469 ATCC 35469T [CU928158]
833257
833185
-
Arg
CCT
[Ensembl]
¡û
>W1910502416
FYBE01000103
Gammaproteobacteria
Kosakonia oryzendophytica [FYBE]
714636
714710
+
Arg
CCT
[ENA]
¡û
>W1910655558
MADH01000041
Gammaproteobacteria
Escherichia coli ECG013 [MADH]
42637
42711
+
Arg
CCT
[ENA]
¡û
>W1910948845
NJLL01000044
Gammaproteobacteria
Escherichia coli MOD1-EC584 [NJLL]
3699
3773
+
Arg
CCT
[ENA]
¡û
>W1911015133
NLLI01000032
Gammaproteobacteria
Escherichia coli MOD1-EC5565 [NLLI]
37805
37731
-
Arg
CCT
[ENA]
¡û
>W1911015204
NLLJ01000034
Gammaproteobacteria
Escherichia coli MOD1-EC5564 [NLLJ]
37805
37731
-
Arg
CCT
[ENA]
¡û
>W1911028992
NLTO01000002
Gammaproteobacteria
Escherichia coli MOD1-EC5069 [NLTO]
41012
40938
-
Arg
CCT
[ENA]
¡û
>W1911082537
NNAL01000031
Gammaproteobacteria
Escherichia coli WW38 [NNAL]
16548
16622
+
Arg
CCT
[ENA]
¡û
>W1911113302
NOHS01000001
Gammaproteobacteria
Escherichia coli MOD1-EC5039 [NOHS]
241230
241156
-
Arg
CCT
[ENA]
¡û
>W1911220429
NRTG01000192
Gammaproteobacteria
Escherichia coli A334 [NRTG]
105908
105834
-
Arg
CCT
[ENA]
¡û
>W1911245893
NSKL01000066
Gammaproteobacteria
Escherichia coli 203 [NSKL]
18082
18008
-
Arg
CCT
[ENA]
¡û
>W1911287143
NTNT01000001
Gammaproteobacteria
Escherichia coli MOD1-EC6252 [NTNT]
27452
27378
-
Arg
CCT
[ENA]
¡û
>W1911547500
OVCZ01000047
Gammaproteobacteria
Pseudomonas aeruginosa KCRI-377 [OVCZ]
125
51
-
Arg
CCT
[ENA]
¡û
>W1911575615
PDIL01000012
Gammaproteobacteria
Escherichia sp. E1130 [PDIL]
58288
58362
+
Arg
CCT
[ENA]
¡û
>W1810013573
BGLQ01000251
Gammaproteobacteria
Escherichia coli TUM1809 [BGLQ]
347
421
+
Arg
CCT
[ENA]
¡û
>W1810307742
PTRZ01000015
Gammaproteobacteria
Escherichia fergusonii MOD1-EC6349 [PTRZ]
60959
61033
+
Arg
CCT
[ENA]
¡û
>W1810309259
PTSU01000006
Gammaproteobacteria
Escherichia fergusonii MOD1-EC5837 [PTSU]
197866
197940
+
Arg
CCT
[ENA]
¡û
>W1810321567
PUBX01000011
Gammaproteobacteria
Escherichia fergusonii YH17132 [PUBX]
250642
250716
+
Arg
CCT
[ENA]
¡û
>W1810360619
PVPT01000049
Gammaproteobacteria
Escherichia coli BP1473 [PVPT]
44764
44838
+
Arg
CCT
[ENA]
¡û
>W1810360679
PVPU01000045
Gammaproteobacteria
Escherichia coli B24621 [PVPU]
44762
44836
+
Arg
CCT
[ENA]
¡û
>W1810360813
PVPW01000044
Gammaproteobacteria
Escherichia coli B26737 [PVPW]
44762
44836
+
Arg
CCT
[ENA]
¡û
>W1810423719
PYTZ01000002
Gammaproteobacteria
Kosakonia sp. H7A [PYTZ]
4652
4578
-
Arg
CCT
[ENA]
¡û
>W1810533618
QCZR01000001
Gammaproteobacteria
Edwardsiella piscicida MA97-004 [QCZR]
2071523
2071597
+
Arg
CCT
[ENA]
¡û
>W1810533703
QCZS01000001
Gammaproteobacteria
Edwardsiella piscicida S07-262 [QCZS]
2028779
2028853
+
Arg
CCT
[ENA]
¡û
>W1810533977
QCZV01000002
Gammaproteobacteria
Edwardsiella piscicida S07-348 [QCZV]
3919
3845
-
Arg
CCT
[ENA]
¡û
>W1810581666
QETX01000099
Gammaproteobacteria
Escherichia coli E393 [QETX]
1619
1545
-
Arg
CCT
[ENA]
¡û
>W1810695342
QLNK01000024
Gammaproteobacteria
Escherichia coli ECWJ1 [QLNK]
44684
44758
+
Arg
CCT
[ENA]
¡û
>W1511222402
JNGH01000091
Gammaproteobacteria
Trabulsiella odontotermitis 1 [JNGH]
1737
1663
-
Arg
CCT
[ENA]
¡û
>W1511381719
JSRC01000092
Gammaproteobacteria
Escherichia coli blood-09-0949 [JSRC]
32611
32685
+
Arg
CCT
[ENA]
¡û
>W1511441534
JUQR01000220
Gammaproteobacteria
Pantoea vagans 848_PVAG [JUQR]
11330
11256
-
Arg
CCT
[ENA]
¡û
>W1511555230
JZWN01000023
Gammaproteobacteria
Escherichia fergusonii GTA-294-5-RBA-P2 [JZWN]
583542
583616
+
Arg
CCT
[ENA]
¡û
>W11150705
AEVY01000011
Gammaproteobacteria
Escherichia fergusonii ECD227 [AEVY]
1110
1036
-
Arg
CCT
[ENA]
¡û
>C161042303
CP012487
Gammaproteobacteria
Enterobacter sp. FY-07 [CP012487]
1531156
1531082
-
Arg
CCT
[Ensembl]
¡û
>W121102987
AKYD01000016
Gammaproteobacteria
Kosakonia radicincitans DSM 16656 [AKYD]
291116
291042
-
Arg
CCT
[ENA]
¡û
>C131013122
CP004141
Gammaproteobacteria
Edwardsiella piscicida C07-087 [CP004141]
2689281
2689355
+
Arg
CCT
[Ensembl]
¡û
>W1610515337
FMAY01000001
Gammaproteobacteria
Kosakonia oryzendophytica oryzendophyticus [FMAY]
442393
442467
+
Arg
CCT
[ENA]
¡û
>W1610795300
LONM01000043
Gammaproteobacteria
Escherichia coli [LONM]
37769
37695
-
Arg
CCT
[ENA]
¡û
>W1610796898
LOOH01000031
Gammaproteobacteria
Escherichia coli [LOOH]
20351
20277
-
Arg
CCT
[ENA]
¡û
>W1610800979
LORE01000019
Gammaproteobacteria
Escherichia coli [LORE]
7119
7193
+
Arg
CCT
[ENA]
¡û
>W1610801024
LORF01000001
Gammaproteobacteria
Escherichia coli [LORF]
120005
120079
+
Arg
CCT
[ENA]
¡û
>W1610905297
LSAP01000072
Gammaproteobacteria
Escherichia coli [LSAP]
44758
44832
+
Arg
CCT
[ENA]
¡û
>W1710001243
ADIT01000047
Gammaproteobacteria
Escherichia coli E1114 [ADIT]
36118
36190
+
Arg
CCT
[ENA]
¡û
>W1710501027
FMAY01000001
Gammaproteobacteria
Kosakonia oryzendophytica oryzendophyticus [FMAY]
442393
442467
+
Arg
CCT
[ENA]
¡û
>W1710544624
FOAY01000008
Gammaproteobacteria
Kosakonia sacchari [FOAY]
45250
45324
+
Arg
CCT
[ENA]
¡û
>W1710553458
FOHP01000001
Gammaproteobacteria
Kosakonia radicincitans NFIX09 [FOHP]
284703
284629
-
Arg
CCT
[ENA]
¡û
>W1710560086
FONC01000009
Gammaproteobacteria
Kosakonia radicincitans NFIX04 [FONC]
212453
212379
-
Arg
CCT
[ENA]
¡û
>W1710574633
FOYJ01000010
Gammaproteobacteria
Kosakonia radicincitans NFIX08 [FOYJ]
212220
212146
-
Arg
CCT
[ENA]
¡û
>W1710577464
FPAV01000009
Gammaproteobacteria
Kosakonia radicincitans NFIX06 [FPAV]
212120
212046
-
Arg
CCT
[ENA]
¡û
>W1710581023
FPJU01000008
Gammaproteobacteria
Kosakonia radicincitans NFIX03 [FPJU]
212165
212091
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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