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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.356476 (80 seq.)
>W1711090570
LTAV01000011
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
78428
78353
-
Lys
TTT
[ENA]
¡û
>W1711090622
LTAV01000056
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
184
259
+
Lys
TTT
[ENA]
¡û
>W1711090627
LTAV01000079
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
224
149
-
Lys
TTT
[ENA]
¡û
>W1711090661
LTAW01000007
Gammaproteobacteria
Marinomonas atlantica [LTAW]
174205
174280
+
Lys
TTT
[ENA]
¡û
>W1711090673
LTAW01000011
Gammaproteobacteria
Marinomonas atlantica [LTAW]
77
2
-
Lys
TTT
[ENA]
¡û
>W1711090699
LTAW01000032
Gammaproteobacteria
Marinomonas atlantica [LTAW]
181
106
-
Lys
TTT
[ENA]
¡û
>W1712081292
NHNK01000006
Gammaproteobacteria
Marinomonas agarivorans QM202 [NHNK]
387
312
-
Lys
TTT
[ENA]
¡û
>W1712081294
NHNK01000006
Gammaproteobacteria
Marinomonas agarivorans QM202 [NHNK]
159
84
-
Lys
TTT
[ENA]
¡û
>WENV180042129
LNFX01000216
[LNFX] marine sediment metagenome; antarctic beach sand mud
31127
31052
-
Lys
TTT
[ENA]
¢þ
>W141191428
AYOZ01000061
Gammaproteobacteria
Marinomonas profundimaris D104 [AYOZ]
68829
68754
-
Lys
TTT
[ENA]
¡û
>WENV170780957
MAAB01028801
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
284
209
-
Lys
TTT
[ENA]
¢þ
>WENV170780958
MAAB01028801
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
174
99
-
Lys
TTT
[ENA]
¢þ
>C191039795
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
2004882
2004957
+
Lys
TTT
-
¡û
>C191039796
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
2004984
2005059
+
Lys
TTT
-
¡û
>C191039815
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
3290023
3289948
-
Lys
TTT
-
¡û
>C191039818
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
3289731
3289656
-
Lys
TTT
-
¡û
>W09106435
AAVH01000002
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
6272
6347
+
Lys
TTT
[ENA]
¡û
>W09106436
AAVH01000002
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
6377
6452
+
Lys
TTT
[ENA]
¡û
>W09106490
AAVH01000052
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
1711
1636
-
Lys
TTT
[ENA]
¡û
>W09106493
AAVH01000052
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
1420
1345
-
Lys
TTT
[ENA]
¡û
>W1910584810
JYBL01000002
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
101152
101227
+
Lys
TTT
[ENA]
¡û
>W1910584811
JYBL01000002
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
101256
101331
+
Lys
TTT
[ENA]
¡û
>W1910584827
JYBL01000006
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
467
392
-
Lys
TTT
[ENA]
¡û
>W1910584830
JYBL01000006
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
170
95
-
Lys
TTT
[ENA]
¡û
>W1810606202
QGOK01000003
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
537589
537664
+
Lys
TTT
[ENA]
¡û
>W1810606203
QGOK01000003
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
537692
537767
+
Lys
TTT
[ENA]
¡û
>W1810606221
QGOK01000006
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
160909
160984
+
Lys
TTT
[ENA]
¡û
>W1810606224
QGOK01000006
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
161210
161285
+
Lys
TTT
[ENA]
¡û
>W1810625248
QHJF01000025
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
58629
58704
+
Lys
TTT
[ENA]
¡û
>W1810625252
QHJF01000025
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
59016
59091
+
Lys
TTT
[ENA]
¡û
>W1810625256
QHJF01000025
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
59403
59478
+
Lys
TTT
[ENA]
¡û
>W1810625259
QHJF01000025
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
59702
59777
+
Lys
TTT
[ENA]
¡û
>W1810625266
QHJF01000027
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
90440
90365
-
Lys
TTT
[ENA]
¡û
>W1810625267
QHJF01000027
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
90337
90262
-
Lys
TTT
[ENA]
¡û
>W1810676243
QKLW01000001
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
959796
959871
+
Lys
TTT
[ENA]
¡û
>W1810676244
QKLW01000001
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
959898
959973
+
Lys
TTT
[ENA]
¡û
>W1810676273
QKLW01000009
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
79363
79438
+
Lys
TTT
[ENA]
¡û
>W1810676276
QKLW01000009
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
79655
79730
+
Lys
TTT
[ENA]
¡û
>W1810720332
QNRF01000005
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
294338
294413
+
Lys
TTT
[ENA]
¡û
>W1810720354
QNRF01000009
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
54865
54790
-
Lys
TTT
[ENA]
¡û
>W1810720358
QNRF01000009
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
54375
54300
-
Lys
TTT
[ENA]
¡û
>W1810721666
QNSE01000003
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
163216
163291
+
Lys
TTT
[ENA]
¡û
>W1810721667
QNSE01000003
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
163320
163395
+
Lys
TTT
[ENA]
¡û
>W1810721698
QNSE01000007
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
132247
132172
-
Lys
TTT
[ENA]
¡û
>W1810721701
QNSE01000007
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
131949
131874
-
Lys
TTT
[ENA]
¡û
>W1810885331
QUNG01000002
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
69825
69900
+
Lys
TTT
[ENA]
¡û
>W1810885332
QUNG01000002
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
69935
70010
+
Lys
TTT
[ENA]
¡û
>W1810885374
QUNG01000014
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
14641
14716
+
Lys
TTT
[ENA]
¡û
>W1810885377
QUNG01000014
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
14940
15015
+
Lys
TTT
[ENA]
¡û
>C11114985
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
635002
635077
+
Lys
TTT
[Ensembl]
¡û
>C11114988
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
635297
635372
+
Lys
TTT
[Ensembl]
¡û
>C11115051
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
1907173
1907098
-
Lys
TTT
[Ensembl]
¡û
>W1510741329
CYHG01000005
Gammaproteobacteria
Marinomonas fungiae JCM 18476 [CYHG]
36525
36450
-
Lys
TTT
[ENA]
¡û
>W1511518549
JXYC01000047
Gammaproteobacteria
Marinomonas sp. S3726 [JXYC]
81098
81173
+
Lys
TTT
[ENA]
¡û
>W1511518550
JXYC01000047
Gammaproteobacteria
Marinomonas sp. S3726 [JXYC]
81202
81277
+
Lys
TTT
[ENA]
¡û
>W1511518560
JXYC01000076
Gammaproteobacteria
Marinomonas sp. S3726 [JXYC]
275
350
+
Lys
TTT
[ENA]
¡û
>W1610506619
FLRA01000008
Gammaproteobacteria
Marinomonas gallaica CECT 5115 [FLRA]
47826
47901
+
Lys
TTT
[ENA]
¡û
>W1610506622
FLRA01000008
Gammaproteobacteria
Marinomonas gallaica CECT 5115 [FLRA]
48124
48199
+
Lys
TTT
[ENA]
¡û
>W1610506669
FLRA01000023
Gammaproteobacteria
Marinomonas gallaica CECT 5115 [FLRA]
189609
189684
+
Lys
TTT
[ENA]
¡û
>W1610506670
FLRA01000023
Gammaproteobacteria
Marinomonas gallaica CECT 5115 [FLRA]
189710
189785
+
Lys
TTT
[ENA]
¡û
>W1610506694
FLRB01000001
Gammaproteobacteria
Marinomonas gallaica CECT 5116 [FLRB]
47826
47901
+
Lys
TTT
[ENA]
¡û
>W1610506697
FLRB01000001
Gammaproteobacteria
Marinomonas gallaica CECT 5116 [FLRB]
48124
48199
+
Lys
TTT
[ENA]
¡û
>W1610506730
FLRB01000013
Gammaproteobacteria
Marinomonas gallaica CECT 5116 [FLRB]
190169
190244
+
Lys
TTT
[ENA]
¡û
>W1610506731
FLRB01000013
Gammaproteobacteria
Marinomonas gallaica CECT 5116 [FLRB]
190270
190345
+
Lys
TTT
[ENA]
¡û
>W1610540180
JSEO01000001
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
288556
288481
-
Lys
TTT
[ENA]
¡û
>W1610540181
JSEO01000001
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
288452
288377
-
Lys
TTT
[ENA]
¡û
>W1610540205
JSEO01000005
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
70956
70881
-
Lys
TTT
[ENA]
¡û
>W1610540209
JSEO01000005
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
70544
70469
-
Lys
TTT
[ENA]
¡û
>W1610540212
JSEO01000005
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
70223
70148
-
Lys
TTT
[ENA]
¡û
>W1610924810
LTAV01000011
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
78428
78353
-
Lys
TTT
[ENA]
¡û
>W1610924862
LTAV01000056
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
184
259
+
Lys
TTT
[ENA]
¡û
>W1610924867
LTAV01000079
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
224
149
-
Lys
TTT
[ENA]
¡û
>W1610924901
LTAW01000007
Gammaproteobacteria
Marinomonas atlantica [LTAW]
174205
174280
+
Lys
TTT
[ENA]
¡û
>W1610924913
LTAW01000011
Gammaproteobacteria
Marinomonas atlantica [LTAW]
77
2
-
Lys
TTT
[ENA]
¡û
>W1610924939
LTAW01000032
Gammaproteobacteria
Marinomonas atlantica [LTAW]
181
106
-
Lys
TTT
[ENA]
¡û
>W1710643201
JSEO01000001
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
288556
288481
-
Lys
TTT
[ENA]
¡û
>W1710643202
JSEO01000001
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
288452
288377
-
Lys
TTT
[ENA]
¡û
>W1710643226
JSEO01000005
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
70956
70881
-
Lys
TTT
[ENA]
¡û
>W1710643230
JSEO01000005
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
70544
70469
-
Lys
TTT
[ENA]
¡û
>W1710643233
JSEO01000005
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
70223
70148
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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