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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.356609 (24 seq.)
>W1711149103
LVLE01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
587903
587829
-
Arg
CCT
[ENA]
¡û
>W1711421600
MHZG01000008
Betaproteobacteria
Polynucleobacter sp. GWA2_45_21 [MHZG]
18819
18745
-
Arg
CCT
[ENA]
¡û
>W1712077074
NGUP01000005
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
102572
102646
+
Arg
CCT
[ENA]
¡û
>C171035132
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
1033797
1033723
-
Arg
CCT
-
¡û
>C171035170
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
1052630
1052556
-
Arg
CCT
-
¡û
>C017399
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
890074
890000
-
Arg
CCT
[Ensembl]
¡û
>WENV180851778
ODKV01207886
[ODKV] human metagenome; G_DNA_Stool
268
194
-
Arg
CCT
[ENA]
¢þ
>WENV181828143
OGUM01062388
[OGUM] human gut metagenome; faeces
364
438
+
Arg
CCT
[ENA]
¢þ
>WENV181992328
OHAQ01040102
[OHAQ] human gut metagenome; faeces
504
578
+
Arg
CCT
[ENA]
¢þ
>C08007621
CP001010
Betaproteobacteria
Polynucleobacter necessarius [CP001010]
821513
821587
+
Arg
CCT
[Ensembl]
¡û
>WENV182885843
OKSC01031802
[OKSC] human gut metagenome; faeces
133
207
+
Arg
CCT
[ENA]
¢þ
>WENV183086717
OLJF01077634
[OLJF] metagenome; faeces
497
423
-
Arg
CCT
[ENA]
¢þ
>WENV170599277
FUWD010070307
[FUWD] metagenome; unknown
181
107
-
Arg
CCT
[ENA]
¢þ
>WENV170599552
FUWD010079528
[FUWD] metagenome; unknown
76
150
+
Arg
CCT
[ENA]
¢þ
>WENV170617278
FUWD012920043
[FUWD] metagenome; unknown
672
598
-
Arg
CCT
[ENA]
¢þ
>WENV170617279
FUWD012920044
[FUWD] metagenome; unknown
212
138
-
Arg
CCT
[ENA]
¢þ
>WENV170707694
LNAP01029815
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2408
2334
-
Arg
CCT
[ENA]
¢þ
>C181078396
CP023276
Betaproteobacteria
Polynucleobacter difficilis AM-8B5 [CP023276]
926154
926080
-
Arg
CCT
-
¡û
>C181219021
LT606951
Betaproteobacteria
Polynucleobacter necessarius [LT606951]
1071286
1071360
+
Arg
CCT
-
¡û
>W09106286
AAUC01000004
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
19082
19008
-
Arg
CCT
[ENA]
¡û
>W09107516
ABJA01000001
Betaproteobacteria
Polynucleobacter necessarius STIR1 [ABJA]
772035
771961
-
Arg
CCT
[ENA]
¡û
>W09119208
ACDP01000043
Betaproteobacteria
Oxalobacter paraformigenes HOxBLS [ACDP]
303121
303047
-
Arg
CCT
[ENA]
¡û
>C141003810
CP004348
Betaproteobacteria
beta proteobacterium CB [CP004348]
877802
877728
-
Arg
CCT
[Ensembl]
¡û
>W1710586000
FQWU01000002
Betaproteobacteria
Massilia sp. CF038 [FQWU]
1111474
1111548
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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