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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.356699 (115 seq.)
>W1711043861
LRMP01000001
Actinomycetota
Brachybacterium sp. sponge [LRMP]
1230345
1230272
-
Arg
ACG
[ENA]
¡û
>W1711048113
LRPJ01000009
Actinomycetota
Winkia neuii [LRPJ]
27061
26988
-
Arg
ACG
[ENA]
¡û
>W1711185721
LWNQ01000004
Actinomycetota
Dermabacter sp. HMSC08H10 [LWNQ]
50911
50986
+
Arg
ACG
[ENA]
¡û
>W1711186242
LWOB01000135
Actinomycetota
Brachybacterium sp. HMSC06H03 [LWOB]
5638
5565
-
Arg
ACG
[ENA]
¡û
>W131217138
ATWL01000013
Actinomycetota
Ruania albidiflava DSM 18029 [ATWL]
21675
21600
-
Arg
ACG
[ENA]
¡û
>W131206135
ATFL01000006
Actinomycetota
Propionibacterium sp. oral taxon 192 oral taxon 192 str. F0372 [ATFL]
15761
15836
+
Arg
ACG
[ENA]
¡û
>W1711503091
MKTH01000013
Actinomycetota
Cellulomonas sp. 73-92 [MKTH]
200805
200732
-
Arg
ACG
[ENA]
¡û
>W1711505437
MKVM01000005
Actinomycetota
Micrococcales bacterium 72-143 [MKVM]
1020536
1020463
-
Arg
ACG
[ENA]
¡û
>W1712109180
NJFD01000002
Actinomycetota
Mobiluncus mulieris [NJFD]
679413
679489
+
Arg
ACG
[ENA]
¡û
>W131098110
AORC01000009
Actinomycetota
Brachybacterium muris UCD-AY4 [AORC]
189392
189319
-
Arg
ACG
[ENA]
¡û
>W131206264
ATFO01000002
Actinomycetota
Dermabacter sp. HFH0086 [ATFO]
251439
251514
+
Arg
ACG
[ENA]
¡û
>W131215283
ATUW01000006
Actinomycetota
Winkia neuii subsp. neuii DSM 8576 [ATUW]
32514
32587
+
Arg
ACG
[ENA]
¡û
>W141055848
AOST01000015
Actinomycetota
Cutibacterium granulosum TM11 [AOST]
15808
15733
-
Arg
ACG
[ENA]
¡û
>WENV180749878
ODHS01000063
[ODHS] human metagenome; G_DNA_Supragingival plaque
10779
10706
-
Arg
ACG
[ENA]
¢þ
>WENV180777164
ODIL01000209
[ODIL] human metagenome; G_DNA_Supragingival plaque
11027
11100
+
Arg
ACG
[ENA]
¢þ
>WENV180788827
ODIS01127376
[ODIS] human metagenome; G_DNA_Supragingival plaque
386
311
-
Arg
ACG
[ENA]
¢þ
>WENV180804851
ODJG01017488
[ODJG] human metagenome; G_DNA_Supragingival plaque
1065
992
-
Arg
ACG
[ENA]
¢þ
>WENV180814661
ODJO01032873
[ODJO] human metagenome; G_DNA_Supragingival plaque
8
81
+
Arg
ACG
[ENA]
¢þ
>WENV180823605
ODJW01072889
[ODJW] human metagenome; G_DNA_Supragingival plaque
256
181
-
Arg
ACG
[ENA]
¢þ
>WENV180824611
ODJX01019308
[ODJX] human metagenome; G_DNA_Supragingival plaque
53
128
+
Arg
ACG
[ENA]
¢þ
>WENV180833345
ODKC01033756
[ODKC] human metagenome; G_DNA_Supragingival plaque
104
177
+
Arg
ACG
[ENA]
¢þ
>WENV180833921
ODKD01000972
[ODKD] human metagenome; G_DNA_Supragingival plaque
9240
9315
+
Arg
ACG
[ENA]
¢þ
>WENV180836407
ODKE01176826
[ODKE] human metagenome; G_DNA_Supragingival plaque
100
25
-
Arg
ACG
[ENA]
¢þ
>WENV180843988
ODKN01022684
[ODKN] human metagenome; G_DNA_Supragingival plaque
611
536
-
Arg
ACG
[ENA]
¢þ
>WENV180846650
ODKT01017380
[ODKT] human metagenome; G_DNA_Supragingival plaque
1520
1595
+
Arg
ACG
[ENA]
¢þ
>WENV180859615
ODLD01001916
[ODLD] human metagenome; G_DNA_Supragingival plaque
6702
6627
-
Arg
ACG
[ENA]
¢þ
>WENV180889447
ODMN01043547
[ODMN] human metagenome; G_DNA_Supragingival plaque
395
468
+
Arg
ACG
[ENA]
¢þ
>WENV180933318
ODTR01000025
[ODTR] human metagenome; G_DNA_Supragingival plaque
46572
46499
-
Arg
ACG
[ENA]
¢þ
>WENV180934408
ODTS01000022
[ODTS] human metagenome; G_DNA_Subgingival plaque
62628
62701
+
Arg
ACG
[ENA]
¢þ
>WENV180945493
ODUC01180795
[ODUC] human metagenome; G_DNA_Supragingival plaque
240
315
+
Arg
ACG
[ENA]
¢þ
>WENV180958788
ODUL01046306
[ODUL] human metagenome; G_DNA_Supragingival plaque
112
185
+
Arg
ACG
[ENA]
¢þ
>WENV180980673
ODVE01001026
[ODVE] human metagenome; G_DNA_Supragingival plaque
4668
4743
+
Arg
ACG
[ENA]
¢þ
>WENV180982594
ODVF01000139
[ODVF] human metagenome; G_DNA_Supragingival plaque
49079
49004
-
Arg
ACG
[ENA]
¢þ
>WENV181002689
ODVX01001214
[ODVX] human metagenome; G_DNA_Supragingival plaque
12646
12571
-
Arg
ACG
[ENA]
¢þ
>WENV181008022
ODWE01001533
[ODWE] human metagenome; G_DNA_Supragingival plaque
1713
1640
-
Arg
ACG
[ENA]
¢þ
>WENV181008695
ODWE01011279
[ODWE] human metagenome; G_DNA_Supragingival plaque
2998
2925
-
Arg
ACG
[ENA]
¢þ
>WENV181051240
ODYD01292588
[ODYD] human metagenome; G_DNA_Supragingival plaque
111
186
+
Arg
ACG
[ENA]
¢þ
>WENV181063825
ODYP01003952
[ODYP] human metagenome; G_DNA_Supragingival plaque
4001
3926
-
Arg
ACG
[ENA]
¢þ
>WENV181070900
OEAE01023700
[OEAE] human metagenome; G_DNA_Supragingival plaque
671
596
-
Arg
ACG
[ENA]
¢þ
>WENV181077280
OEAP01038216
[OEAP] human metagenome; G_DNA_Supragingival plaque
99
172
+
Arg
ACG
[ENA]
¢þ
>WENV181080988
OEAS01110106
[OEAS] human metagenome; G_DNA_Supragingival plaque
685
758
+
Arg
ACG
[ENA]
¢þ
>WENV181082583
OEAV01000100
[OEAV] human metagenome; G_DNA_Supragingival plaque
53685
53610
-
Arg
ACG
[ENA]
¢þ
>WENV181122165
OEFL01106241
[OEFL] human metagenome; G_DNA_Supragingival plaque
128
55
-
Arg
ACG
[ENA]
¢þ
>WENV181123253
OEFP01000001
[OEFP] human metagenome; G_DNA_R_Retroauricular crease
195773
195698
-
Arg
ACG
[ENA]
¢þ
>WENV181165606
OEIS01058922
[OEIS] soil metagenome; soil
190
115
-
Arg
ACG
[ENA]
¢þ
>WENV181177704
OEJS01011544
[OEJS] human metagenome; G_DNA_Supragingival plaque
1693
1620
-
Arg
ACG
[ENA]
¢þ
>WENV181181827
OEJV01000343
[OEJV] human metagenome; G_DNA_Supragingival plaque
23290
23215
-
Arg
ACG
[ENA]
¢þ
>WENV182635882
OJKZ01000003
[OJKZ] metagenome; surface
200936
200861
-
Arg
ACG
[ENA]
¢þ
>WENV182639980
OJLB01000007
[OJLB] metagenome; surface
200936
200861
-
Arg
ACG
[ENA]
¢þ
>WENV182643858
OJLW01001863
[OJLW] metagenome; surface
2225
2150
-
Arg
ACG
[ENA]
¢þ
>WENV182644579
OJLY01000021
[OJLY] metagenome; surface
4776
4851
+
Arg
ACG
[ENA]
¢þ
>WENV182799909
OJTY01000005
[OJTY] human gut metagenome; human gut
42310
42385
+
Arg
ACG
[ENA]
¢þ
>WENV182800715
OJUF01000768
[OJUF] human gut metagenome; human gut
187
262
+
Arg
ACG
[ENA]
¢þ
>WENV182804576
OJUV01002669
[OJUV] human gut metagenome; human gut
769
694
-
Arg
ACG
[ENA]
¢þ
>WENV182807552
OJVY01000002
[OJVY] human gut metagenome; human gut
24221
24296
+
Arg
ACG
[ENA]
¢þ
>WENV182814097
OJYH01000021
[OJYH] human gut metagenome; human gut
21168
21241
+
Arg
ACG
[ENA]
¢þ
>WENV182816420
OJZA01000514
[OJZA] human gut metagenome; human gut
6010
5935
-
Arg
ACG
[ENA]
¢þ
>WENV182819759
OKAF01006651
[OKAF] human gut metagenome; human gut
384
459
+
Arg
ACG
[ENA]
¢þ
>WENV182823581
OKBV01000458
[OKBV] human gut metagenome; human gut
916
843
-
Arg
ACG
[ENA]
¢þ
>WENV182825485
OKCK01000082
[OKCK] human gut metagenome; human gut
24046
23973
-
Arg
ACG
[ENA]
¢þ
>WENV182825531
OKCK01000244
[OKCK] human gut metagenome; human gut
10859
10784
-
Arg
ACG
[ENA]
¢þ
>WENV182831671
OKEG01000094
[OKEG] human gut metagenome; human gut
35649
35574
-
Arg
ACG
[ENA]
¢þ
>WENV182835609
OKFO01000274
[OKFO] human gut metagenome; human gut
97
172
+
Arg
ACG
[ENA]
¢þ
>WENV182837417
OKGH01000014
[OKGH] human gut metagenome; human gut
61735
61660
-
Arg
ACG
[ENA]
¢þ
>WENV182845569
OKJE01000073
[OKJE] human gut metagenome; human gut
43050
42975
-
Arg
ACG
[ENA]
¢þ
>WENV182845915
OKJH01001803
[OKJH] human gut metagenome; human gut
927
852
-
Arg
ACG
[ENA]
¢þ
>WENV182852441
OKLY01000075
[OKLY] human gut metagenome; human gut
5704
5629
-
Arg
ACG
[ENA]
¢þ
>WENV182855219
OKMY01000411
[OKMY] human gut metagenome; human gut
11094
11169
+
Arg
ACG
[ENA]
¢þ
>WENV182858681
OKOG01000002
[OKOG] human gut metagenome; human gut
284969
284894
-
Arg
ACG
[ENA]
¢þ
>WENV182863226
OKPS01000002
[OKPS] human gut metagenome; human gut
176877
176802
-
Arg
ACG
[ENA]
¢þ
>WENV183081046
OLIZ01000035
[OLIZ] human gut metagenome; human gut
24976
25049
+
Arg
ACG
[ENA]
¢þ
>WENV183087579
OLJL01000032
[OLJL] human gut metagenome; human gut
13092
13019
-
Arg
ACG
[ENA]
¢þ
>WENV183087942
OLJQ01000116
[OLJQ] human gut metagenome; human gut
5325
5250
-
Arg
ACG
[ENA]
¢þ
>WENV183508683
OMHE01013608
[OMHE] human oral metagenome; human oral
107
182
+
Arg
ACG
[ENA]
¢þ
>WENV183718860
PDWJ01007090
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
13314
13389
+
Arg
ACG
[ENA]
¢þ
>WENV183726806
PJTO01000187
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
4701
4774
+
Arg
ACG
[ENA]
¢þ
>WENV183729649
PJTR01000003
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
363610
363683
+
Arg
ACG
[ENA]
¢þ
>WENV183732200
PJTW01000002
[PJTW] soil metagenome; Soil enriched on wood chips
194848
194921
+
Arg
ACG
[ENA]
¢þ
>WENV183734275
PJTZ01000814
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
107
34
-
Arg
ACG
[ENA]
¢þ
>WENV183737936
PJUD01053922
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
620
547
-
Arg
ACG
[ENA]
¢þ
>WENV183739799
PJUF01000016
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
251060
250987
-
Arg
ACG
[ENA]
¢þ
>WENV183743083
PJUJ01000027
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
133221
133294
+
Arg
ACG
[ENA]
¢þ
>W141400426
JDRS01000003
Actinomycetota
Dermabacter hominis 1368 [JDRS]
13474
13399
-
Arg
ACG
[ENA]
¡û
>C181224554
LT906441
Actinomycetota
Cutibacterium granulosum NCTC11865 [LT906441]
340218
340143
-
Arg
ACG
-
¡û
>C191173839
CP040007
Actinomycetota
Arachnia propionica F0700 [CP040007]
3180987
3180912
-
Arg
ACG
-
¡û
>C191210854
LR134406
Actinomycetota
Arachnia propionica NCTC12967 [LR134406]
3151577
3151502
-
Arg
ACG
-
¡û
>C191214569
LR134535
Actinomycetota
Arachnia propionica NCTC11666 [LR134535]
3091857
3091782
-
Arg
ACG
-
¡û
>W09108562
ABTJ01000079
Actinomycetota
Cellulomonas flavigena DSM 20109 [ABTJ]
8356
8283
-
Arg
ACG
[ENA]
¡û
>W09127318
ACKW01000052
Actinomycetota
Mobiluncus mulieris ATCC 35243 [ACKW]
142284
142208
-
Arg
ACG
[ENA]
¡û
>W1910181094
BJLQ01000023
Actinomycetota
Cellulomonas gelida NBRC 3748 [BJLQ]
44938
44865
-
Arg
ACG
[ENA]
¡û
>W1910321361
FSEE01000013
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 417 [FSEE]
162466
162541
+
Arg
ACG
[ENA]
¡û
>W1910374019
FUHX01000047
Actinomycetota
Actinomycetales bacterium JB111 [FUHX]
12684
12611
-
Arg
ACG
[ENA]
¡û
>W1910498739
FXXB01000008
Actinomycetota
Brachybacterium massiliense mt5 [FXXB]
957554
957629
+
Arg
ACG
[ENA]
¡û
>W1911532909
OIWY01000006
Actinomycetota
Brachybacterium timonense Marseille-P4339 [OIWY]
1571078
1571151
+
Arg
ACG
[ENA]
¡û
>W1911596793
PNHL01000001
Actinomycetota
Brachybacterium sp. UMB0905 [PNHL]
227706
227781
+
Arg
ACG
[ENA]
¡û
>W1911597201
PNHT01000001
Actinomycetota
Actinomyces sp. UMB0918 [PNHT]
997163
997236
+
Arg
ACG
[ENA]
¡û
>W1911702228
QOCI01000007
Actinomycetota
Brachybacterium paraconglomeratum KCTC 9916 [QOCI]
235795
235722
-
Arg
ACG
[ENA]
¡û
>W1911765377
QXCP01000010
Actinomycetota
Brachybacterium sp. EE-P12 [QXCP]
27096
27170
+
Arg
ACG
[ENA]
¡û
>W1810058293
PDJI01000004
Actinomycetota
Georgenia soli DSM 21838 [PDJI]
1738802
1738729
-
Arg
ACG
[ENA]
¡û
>W1810191372
PKKO01000003
Actinomycetota
Winkia neuii UMB0402 [PKKO]
132260
132187
-
Arg
ACG
[ENA]
¡û
>W1810503471
QBKD01000001
Actinomycetota
Microbacteriaceae bacterium MWH-Ta3 [QBKD]
622791
622718
-
Arg
ACG
[ENA]
¡û
>W1510060405
CCXH01000111
Actinomycetota
Actinomyces polynesiensis MS2 [CCXH]
44595
44668
+
Arg
ACG
[ENA]
¡û
>C10103423
CP001964
Actinomycetota
Cellulomonas flavigena DSM 20109 [CP001964]
561380
561453
+
Arg
ACG
[Ensembl]
¡û
>W1511447831
JUZA01000025
Actinomycetota
Arcanobacterium haemolyticum 64_AHAE [JUZA]
150450
150377
-
Arg
ACG
[ENA]
¡û
>W1511683465
LFKW01000066
Actinomycetota
Cellulomonas sp. A375-1 [LFKW]
32586
32659
+
Arg
ACG
[ENA]
¡û
>C121002946
CP002734
Actinomycetota
Arachnia propionica F0230a [CP002734]
3193316
3193241
-
Arg
ACG
[Ensembl]
¡û
>WENV006660
AACY020177965
Marine microbial communities from Global Ocean Sampling (GOS)
1230
1153
-
Arg
ACG
[ENA]
>W1610069548
BCSO01000010
Actinomycetota
Pseudoclavibacter alba NBRC 15616 [BCSO]
11389
11464
+
Arg
ACG
[ENA]
¡û
>W1610095067
CYUG01000017
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
224078
224153
+
Arg
ACG
[ENA]
¡û
>W1610885160
LRMP01000001
Actinomycetota
Brachybacterium sp. sponge [LRMP]
1230345
1230272
-
Arg
ACG
[ENA]
¡û
>W1610889242
LRPJ01000009
Actinomycetota
Winkia neuii [LRPJ]
27061
26988
-
Arg
ACG
[ENA]
¡û
>W1710066921
BCSO01000010
Actinomycetota
Pseudoclavibacter alba NBRC 15616 [BCSO]
11389
11464
+
Arg
ACG
[ENA]
¡û
>W1710097862
CYUG01000017
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
224078
224153
+
Arg
ACG
[ENA]
¡û
>W1710537594
FNTX01000002
Actinomycetota
Ruania alba album [FNTX]
1447948
1448021
+
Arg
ACG
[ENA]
¡û
>W1710566743
FOSE01000003
Actinomycetota
Cellulomonas sp. KH9 [FOSE]
153023
153096
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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