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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.356809 (75 seq.)
>W1711306338
MANJ01000012
Campylobacterota
Helicobacter pullorum [MANJ]
37084
37158
+
Thr
GGT
[ENA]
¡û
>W1711307620
MAPB01000014
Campylobacterota
Helicobacter pullorum [MAPB]
42906
42980
+
Thr
GGT
[ENA]
¡û
>W1711307714
MAPE01000003
Campylobacterota
Helicobacter pullorum [MAPE]
43377
43451
+
Thr
GGT
[ENA]
¡û
>C010584
AE017125
Campylobacterota
Helicobacter hepaticus ATCC 51449 [AE017125]
360937
360863
-
Thr
GGT
[Ensembl]
¡û
>WENV180287643
OBIL01000035
[OBIL] metagenome; hydrothermal vent
3878
3952
+
Thr
GGT
[ENA]
¢þ
>WENV180581871
OCML01013663
[OCML] metagenome; diffuse fluid
216
290
+
Thr
GGT
[ENA]
¢þ
>WENV180647807
OCSI01007784
[OCSI] metagenome; diffuse fluid
75
148
+
Thr
GGT
[ENA]
¢þ
>WENV181212758
OFBU01000018
[OFBU] metagenome; hydrothermal vent
15025
15099
+
Thr
GGT
[ENA]
¢þ
>WENV181213273
OFBV01000061
[OFBV] metagenome; hydrothermal vent
1619
1545
-
Thr
GGT
[ENA]
¢þ
>WENV181213747
OFBW01000019
[OFBW] metagenome; hydrothermal vent
17392
17318
-
Thr
GGT
[ENA]
¢þ
>WENV181213910
OFBW01002104
[OFBW] metagenome; hydrothermal vent
1195
1121
-
Thr
GGT
[ENA]
¢þ
>WENV181214395
OFBY01000013
[OFBY] metagenome; hydrothermal vent
17302
17228
-
Thr
GGT
[ENA]
¢þ
>WENV181214903
OFBZ01000020
[OFBZ] metagenome; hydrothermal vent
13553
13479
-
Thr
GGT
[ENA]
¢þ
>WENV181215390
OFCA01000033
[OFCA] metagenome; hydrothermal vent
185
259
+
Thr
GGT
[ENA]
¢þ
>WENV181215925
OFCB01000074
[OFCB] metagenome; hydrothermal vent
181
255
+
Thr
GGT
[ENA]
¢þ
>WENV181216288
OFCB01016617
[OFCB] metagenome; hydrothermal vent
374
448
+
Thr
GGT
[ENA]
¢þ
>WENV181216454
OFCC01000088
[OFCC] metagenome; hydrothermal vent
3699
3625
-
Thr
GGT
[ENA]
¢þ
>W08010293
ABQS01000049
Campylobacterota
Helicobacter canadensis MIT 98-5491 [ABQS]
14950
14879
-
Thr
GGT
[ENA]
¡û
>W08010318
ABQT01000004
Campylobacterota
Helicobacter cinaedi CCUG 18818 [ABQT]
16288
16217
-
Thr
GGT
[ENA]
¡û
>W141204225
AZJI01000009
Campylobacterota
Helicobacter macacae MIT 99-5501 [AZJI]
96542
96616
+
Thr
GGT
[ENA]
¡û
>WENV183513572
OMKS01005993
[OMKS] sediment metagenome; hot spring sediment
7977
7903
-
Thr
GGT
[ENA]
¢þ
>WENV170692245
LGOV01001556
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
1260
1334
+
Thr
GGT
[ENA]
¢þ
>W09119126
ACDN01000003
Campylobacterota
Helicobacter bilis ATCC 43879 [ACDN]
22466
22392
-
Thr
GGT
[ENA]
¡û
>C191003922
AP018676
Campylobacterota
Helicobacter cinaedi P01D0000 [AP018676]
1593220
1593146
-
Thr
GGT
-
¡û
>C191006450
AP019005
Campylobacterota
Hydrogenimonas sp. [AP019005]
2026277
2026203
-
Thr
GGT
-
¡û
>C191213255
LR134509
Campylobacterota
Helicobacter pullorum NCTC13154 [LR134509]
1533783
1533709
-
Thr
GGT
-
¡û
>W141701694
JMKW01000010
Campylobacterota
Helicobacter bilis ATCC 51630 [JMKW]
34504
34578
+
Thr
GGT
[ENA]
¡û
>W1910546135
FZMI01000024
Campylobacterota
Helicobacter cinaedi [FZMI]
53800
53726
-
Thr
GGT
[ENA]
¡û
>W1910546260
FZMM01000003
Campylobacterota
Helicobacter muridarum [FZMM]
119638
119712
+
Thr
GGT
[ENA]
¡û
>W1910546862
FZNF01000014
Campylobacterota
Helicobacter trogontum [FZNF]
27456
27382
-
Thr
GGT
[ENA]
¡û
>W1910546899
FZNG01000028
Campylobacterota
Helicobacter trogontum [FZNG]
30081
30155
+
Thr
GGT
[ENA]
¡û
>W1910549568
FZPJ01000006
Campylobacterota
Helicobacter mesocricetorum [FZPJ]
83788
83714
-
Thr
GGT
[ENA]
¡û
>W1910549766
FZPO01000058
Campylobacterota
Helicobacter equorum [FZPO]
20223
20297
+
Thr
GGT
[ENA]
¡û
>W1910549784
FZPP01000004
Campylobacterota
Helicobacter marmotae [FZPP]
13248
13322
+
Thr
GGT
[ENA]
¡û
>W1910550658
FZRC01000050
Campylobacterota
Helicobacter sp. 'CLO3_human' [FZRC]
81063
80989
-
Thr
GGT
[ENA]
¡û
>W1910584331
JXTX01000005
Campylobacterota
Helicobacter pullorum 2013BJHL [JXTX]
40879
40805
-
Thr
GGT
[ENA]
¡û
>W1910663815
MBPH01000035
Campylobacterota
Helicobacter winghamensis 196_13 [MBPH]
77844
77918
+
Thr
GGT
[ENA]
¡û
>W1910663851
MBPI01000033
Campylobacterota
Helicobacter winghamensis 228_13 [MBPI]
77868
77942
+
Thr
GGT
[ENA]
¡û
>W1910663888
MBPJ01000041
Campylobacterota
Helicobacter winghamensis 294_13 [MBPJ]
73761
73835
+
Thr
GGT
[ENA]
¡û
>W1910663924
MBPK01000042
Campylobacterota
Helicobacter winghamensis 295_13 [MBPK]
73764
73838
+
Thr
GGT
[ENA]
¡û
>W1910663958
MBPL01000044
Campylobacterota
Helicobacter winghamensis 296_13 [MBPL]
73764
73838
+
Thr
GGT
[ENA]
¡û
>W1910889342
NESU01000004
Campylobacterota
Helicobacter sp. TUL [NESU]
82167
82093
-
Thr
GGT
[ENA]
¡û
>W1910914954
NHYL01000001
Campylobacterota
Helicobacter sp. 11-8110 [NHYL]
558416
558490
+
Thr
GGT
[ENA]
¡û
>W1910915043
NHYN01000008
Campylobacterota
Helicobacter sp. 15-1451 [NHYN]
16661
16587
-
Thr
GGT
[ENA]
¡û
>W1911770845
QXJG01000004
Campylobacterota
Helicobacter burdigaliensis CNRCH 2005/566H [QXJG]
51699
51773
+
Thr
GGT
[ENA]
¡û
>W1810002710
BEYZ01000169
Campylobacterota
Helicobacter cinaedi P05D0741 [BEYZ]
9072
9146
+
Thr
GGT
[ENA]
¡û
>W1810002852
BEZE01000189
Campylobacterota
Helicobacter cinaedi P10D0937 [BEZE]
9073
9147
+
Thr
GGT
[ENA]
¡û
>W1810002995
BEZI01000155
Campylobacterota
Helicobacter cinaedi P17D1144 [BEZI]
9053
9127
+
Thr
GGT
[ENA]
¡û
>W1810003223
BEZO01000202
Campylobacterota
Helicobacter cinaedi P02D0213 [BEZO]
9080
9154
+
Thr
GGT
[ENA]
¡û
>W1810010689
BGKD01000059
Campylobacterota
Helicobacter cinaedi CCUG19503 [BGKD]
9068
9142
+
Thr
GGT
[ENA]
¡û
>W1810010720
BGKE01000052
Campylobacterota
Helicobacter cinaedi CCUG19504 [BGKE]
9081
9155
+
Thr
GGT
[ENA]
¡û
>W1810010807
BGKG01000187
Campylobacterota
Helicobacter cinaedi PAGU1382 [BGKG]
62564
62490
-
Thr
GGT
[ENA]
¡û
>W1810046411
NXLM01000026
Campylobacterota
Helicobacter sp. MIT 99-10781 [NXLM]
9072
9146
+
Thr
GGT
[ENA]
¡û
>W1810046555
NXLQ01000003
Campylobacterota
Helicobacter didelphidarum MIT 17-337 [NXLQ]
155099
155025
-
Thr
GGT
[ENA]
¡û
>W1810046594
NXLR01000003
Campylobacterota
Helicobacter marmotae MIT 98-6070 [NXLR]
136150
136076
-
Thr
GGT
[ENA]
¡û
>W1810046656
NXLT01000003
Campylobacterota
Helicobacter equorum MIT 12-6600 [NXLT]
33165
33239
+
Thr
GGT
[ENA]
¡û
>W1810046771
NXLW01000006
Campylobacterota
Helicobacter aurati MIT 97-5075 [NXLW]
73774
73848
+
Thr
GGT
[ENA]
¡û
>C10107582
FN555004
Campylobacterota
Helicobacter mustelae 12198 [FN555004]
370903
370977
+
Thr
GGT
[Ensembl]
¡û
>C11116224
CP002452
Campylobacterota
Nitratifractor salsuginis DSM 16511 [CP002452]
1944851
1944777
-
Thr
GGT
[Ensembl]
¡û
>W1511353132
JROZ01000001
Campylobacterota
Helicobacter sp. MIT 05-5293 [JROZ]
89261
89335
+
Thr
GGT
[ENA]
¡û
>W1511353334
JRPE01000052
Campylobacterota
Helicobacter magdeburgensis MIT 96-1001 [JRPE]
9329
9403
+
Thr
GGT
[ENA]
¡û
>W1511353398
JRPG01000005
Campylobacterota
Helicobacter bilis ATCC 51630 [JRPG]
24061
23987
-
Thr
GGT
[ENA]
¡û
>W1511353524
JRPJ01000002
Campylobacterota
Helicobacter bilis ATCC 49320 [JRPJ]
341766
341692
-
Thr
GGT
[ENA]
¡û
>W1511353548
JRPK01000082
Campylobacterota
Helicobacter trogontum ATCC 49310 [JRPK]
13146
13220
+
Thr
GGT
[ENA]
¡û
>W1610522065
JNOA01000019
Campylobacterota
Helicobacter pullorum [JNOA]
36536
36462
-
Thr
GGT
[ENA]
¡û
>W1610522100
JNOB01000018
Campylobacterota
Helicobacter pullorum [JNOB]
36644
36570
-
Thr
GGT
[ENA]
¡û
>W1610522223
JNUR01000014
Campylobacterota
Helicobacter pullorum [JNUR]
36583
36509
-
Thr
GGT
[ENA]
¡û
>W1611055692
MANJ01000012
Campylobacterota
Helicobacter pullorum [MANJ]
37084
37158
+
Thr
GGT
[ENA]
¡û
>W1611055903
MAPB01000014
Campylobacterota
Helicobacter pullorum [MAPB]
42906
42980
+
Thr
GGT
[ENA]
¡û
>W1611055997
MAPE01000003
Campylobacterota
Helicobacter pullorum [MAPE]
43377
43451
+
Thr
GGT
[ENA]
¡û
>W1710572935
FOXB01000002
Campylobacterota
Hydrogenimonas thermophila [FOXB]
112579
112653
+
Thr
GGT
[ENA]
¡û
>W1710605544
FWWZ01000001
Campylobacterota
Nitratiruptor tergarcus DSM 16512 [FWWZ]
669894
669968
+
Thr
GGT
[ENA]
¡û
>W1710621991
JNOA01000019
Campylobacterota
Helicobacter pullorum [JNOA]
36536
36462
-
Thr
GGT
[ENA]
¡û
>W1710622026
JNOB01000018
Campylobacterota
Helicobacter pullorum [JNOB]
36644
36570
-
Thr
GGT
[ENA]
¡û
>W1710622149
JNUR01000014
Campylobacterota
Helicobacter pullorum [JNUR]
36583
36509
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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