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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.357205 (94 seq.)
>WENV180320546
OBKO01083983
[OBKO] soil metagenome; Alaskan Permafrost
51
126
+
Ala
GGC
[ENA]
¢þ
>WENV180322516
OBKR01003260
[OBKR] human gut metagenome; feces
5880
5805
-
Ala
GGC
[ENA]
¢þ
>WENV180344911
OBLL01335800
[OBLL] soil metagenome; soil
181
106
-
Ala
GGC
[ENA]
¢þ
>WENV180711359
ODFM01190782
[ODFM] human metagenome; G_DNA_Stool
186
111
-
Ala
GGC
[ENA]
¢þ
>WENV180749114
ODHP01001614
[ODHP] human metagenome; G_DNA_Stool
3976
3901
-
Ala
GGC
[ENA]
¢þ
>WENV180749116
ODHP01001614
[ODHP] human metagenome; G_DNA_Stool
3761
3686
-
Ala
GGC
[ENA]
¢þ
>WENV180812404
ODJN01017075
[ODJN] human metagenome; G_DNA_Stool
85
160
+
Ala
GGC
[ENA]
¢þ
>WENV180849458
ODKV01000457
[ODKV] human metagenome; G_DNA_Stool
29770
29695
-
Ala
GGC
[ENA]
¢þ
>WENV180849460
ODKV01000457
[ODKV] human metagenome; G_DNA_Stool
29531
29456
-
Ala
GGC
[ENA]
¢þ
>WENV180872600
ODLO01090215
[ODLO] human metagenome; G_DNA_Stool
186
111
-
Ala
GGC
[ENA]
¢þ
>WENV180995086
ODVR01000433
[ODVR] human metagenome; G_DNA_Stool
5242
5167
-
Ala
GGC
[ENA]
¢þ
>WENV181070239
OEAE01000501
[OEAE] human metagenome; G_DNA_Supragingival plaque
6793
6718
-
Ala
GGC
[ENA]
¢þ
>WENV181070241
OEAE01000501
[OEAE] human metagenome; G_DNA_Supragingival plaque
6522
6447
-
Ala
GGC
[ENA]
¢þ
>WENV181070528
OEAE01002876
[OEAE] human metagenome; G_DNA_Supragingival plaque
1330
1255
-
Ala
GGC
[ENA]
¢þ
>WENV181070558
OEAE01003263
[OEAE] human metagenome; G_DNA_Supragingival plaque
1152
1227
+
Ala
GGC
[ENA]
¢þ
>WENV181070568
OEAE01003467
[OEAE] human metagenome; G_DNA_Supragingival plaque
2073
2148
+
Ala
GGC
[ENA]
¢þ
>WENV181079255
OEAS01003717
[OEAS] human metagenome; G_DNA_Supragingival plaque
3756
3681
-
Ala
GGC
[ENA]
¢þ
>WENV181110718
OEEK01007923
[OEEK] human metagenome; G_DNA_Stool
3711
3786
+
Ala
GGC
[ENA]
¢þ
>WENV181121438
OEFL01004039
[OEFL] human metagenome; G_DNA_Supragingival plaque
1100
1175
+
Ala
GGC
[ENA]
¢þ
>WENV181165807
OEIS01192871
[OEIS] soil metagenome; soil
61
136
+
Ala
GGC
[ENA]
¢þ
>WENV181169133
OEIV010000335
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
12349
12274
-
Ala
GGC
[ENA]
¢þ
>WENV181169223
OEIV010000754
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
12014
11939
-
Ala
GGC
[ENA]
¢þ
>WENV181170030
OEIV010020451
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1
76
+
Ala
GGC
[ENA]
¢þ
>WENV181177539
OEJS01004468
[OEJS] human metagenome; G_DNA_Supragingival plaque
1404
1479
+
Ala
GGC
[ENA]
¢þ
>WENV181177645
OEJS01008657
[OEJS] human metagenome; G_DNA_Supragingival plaque
1887
1812
-
Ala
GGC
[ENA]
¢þ
>WENV181177647
OEJS01008657
[OEJS] human metagenome; G_DNA_Supragingival plaque
1614
1539
-
Ala
GGC
[ENA]
¢þ
>WENV181257406
OFFU01000838
[OFFU] mouse gut metagenome; faeces
4058
3983
-
Ala
GGC
[ENA]
¢þ
>WENV181400203
OFSF01002359
[OFSF] wastewater metagenome; Exp Tend VB 100WW
5395
5470
+
Ala
GGC
[ENA]
¢þ
>WENV181400369
OFSF01005323
[OFSF] wastewater metagenome; Exp Tend VB 100WW
344
269
-
Ala
GGC
[ENA]
¢þ
>WENV181414559
OGCL01000649
[OGCL] hot springs metagenome; Hot spring water
2017
1942
-
Ala
GGC
[ENA]
¢þ
>WENV181415174
OGCL01005187
[OGCL] hot springs metagenome; Hot spring water
76
1
-
Ala
GGC
[ENA]
¢þ
>WENV181415533
OGCL01013707
[OGCL] hot springs metagenome; Hot spring water
77
2
-
Ala
GGC
[ENA]
¢þ
>WENV181415593
OGCL01015969
[OGCL] hot springs metagenome; Hot spring water
2276
2351
+
Ala
GGC
[ENA]
¢þ
>WENV181415826
OGCL01028827
[OGCL] hot springs metagenome; Hot spring water
471
396
-
Ala
GGC
[ENA]
¢þ
>WENV181416005
OGCL01042339
[OGCL] hot springs metagenome; Hot spring water
76
1
-
Ala
GGC
[ENA]
¢þ
>WENV181428608
OGCW01000002
[OGCW] metagenome; Human gut stool
393019
392944
-
Ala
GGC
[ENA]
¢þ
>WENV182073113
OHFN01032642
[OHFN] human gut metagenome; feces
252
177
-
Ala
GGC
[ENA]
¢þ
>WENV182082572
OHGL01001222
[OHGL] human gut metagenome; feces
6005
6080
+
Ala
GGC
[ENA]
¢þ
>WENV182102620
OHHV01004739
[OHHV] human gut metagenome; feces
1846
1921
+
Ala
GGC
[ENA]
¢þ
>WENV182127887
OHJX01002904
[OHJX] human gut metagenome; feces
636
711
+
Ala
GGC
[ENA]
¢þ
>WENV182150477
OHLI01003159
[OHLI] human gut metagenome; feces
3596
3671
+
Ala
GGC
[ENA]
¢þ
>WENV182449351
OILR01002055
[OILR] human gut metagenome; human gut
138
213
+
Ala
GGC
[ENA]
¢þ
>WENV182690794
OJOE01003503
[OJOE] human gut metagenome; stool sample
3528
3603
+
Ala
GGC
[ENA]
¢þ
>WENV182734302
OJQE01020241
[OJQE] human gut metagenome; stool sample
258
183
-
Ala
GGC
[ENA]
¢þ
>WENV183352763
OLXA01000204
[OLXA] human gut metagenome; feces
10675
10600
-
Ala
GGC
[ENA]
¢þ
>WENV183448247
OMCT01000401
[OMCT] human gut metagenome; feces
26732
26807
+
Ala
GGC
[ENA]
¢þ
>WENV183726531
PJTO01000003
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
454202
454127
-
Ala
GGC
[ENA]
¢þ
>WENV183726533
PJTO01000003
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
453929
453854
-
Ala
GGC
[ENA]
¢þ
>WENV183727259
PJTO01018485
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
508
433
-
Ala
GGC
[ENA]
¢þ
>WENV183727262
PJTO01018485
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
78
3
-
Ala
GGC
[ENA]
¢þ
>WENV183735680
PJUB01000515
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
12421
12496
+
Ala
GGC
[ENA]
¢þ
>WENV183735706
PJUB01000727
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
7673
7598
-
Ala
GGC
[ENA]
¢þ
>WENV183735981
PJUB01023572
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
192
267
+
Ala
GGC
[ENA]
¢þ
>WENV183743430
PJUJ01001171
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
672
747
+
Ala
GGC
[ENA]
¢þ
>WENV183743433
PJUJ01001171
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
1112
1187
+
Ala
GGC
[ENA]
¢þ
>WENV183743634
PJUJ01012909
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
193
118
-
Ala
GGC
[ENA]
¢þ
>WENV170045057
CDYX01027580
[CDYX] gut metagenome; human stools
449
374
-
Ala
GGC
[ENA]
¢þ
>WENV170045059
CDYX01027580
[CDYX] gut metagenome; human stools
227
152
-
Ala
GGC
[ENA]
¢þ
>WENV170080512
CDZX01000244
[CDZX] gut metagenome; human stools
479
404
-
Ala
GGC
[ENA]
¢þ
>WENV170080514
CDZX01000244
[CDZX] gut metagenome; human stools
264
189
-
Ala
GGC
[ENA]
¢þ
>W141400960
JDSK01000003
Betaproteobacteria
Bordetella holmesii 35009 [JDSK]
59967
59892
-
Ala
GGC
[ENA]
¡û
>WENV170573143
FLYJ01000677
[FLYJ] hot springs metagenome; Sediment
192
117
-
Ala
GGC
[ENA]
¢þ
>WENV170573145
FLYJ01000710
[FLYJ] hot springs metagenome; Sediment
182
257
+
Ala
GGC
[ENA]
¢þ
>WENV170574803
FLYN01010319
[FLYN] hot springs metagenome; Sediment
495
420
-
Ala
GGC
[ENA]
¢þ
>WENV170575175
FLYN01039563
[FLYN] hot springs metagenome; Sediment
1090
1165
+
Ala
GGC
[ENA]
¢þ
>WENV170649286
JRHI01016804
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
825
750
-
Ala
GGC
[ENA]
¢þ
>WENV170658440
JTFP01113010
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
101
26
-
Ala
GGC
[ENA]
¢þ
>C181007742
CP009737
Betaproteobacteria
Burkholderia mallei Turkey7 [CP009737, CP009738]
2670875
2670800
-
Ala
GGC
-
¡û
>C181008263
CP009931
Betaproteobacteria
Burkholderia mallei JHU [CP009931, CP009932]
1661515
1661440
-
Ala
GGC
-
¡û
>C181014203
CP014018
Betaproteobacteria
Pandoraea apista FDAARGOS_126 [CP014018]
4557704
4557629
-
Ala
GGC
-
¡û
>C181014207
CP014018
Betaproteobacteria
Pandoraea apista FDAARGOS_126 [CP014018]
3940253
3940178
-
Ala
GGC
-
¡û
>C181014233
CP014018
Betaproteobacteria
Pandoraea apista FDAARGOS_126 [CP014018]
290984
290909
-
Ala
GGC
-
¡û
>C181022464
CP016963
Betaproteobacteria
Bordetella pertussis D799 [CP016963]
1063096
1063021
-
Ala
GGC
-
¡û
>C181023561
CP017119
Betaproteobacteria
Bordetella pertussis J160 [CP017119]
1063077
1063002
-
Ala
GGC
-
¡û
>C181029127
CP017927
Betaproteobacteria
Bordetella pertussis J295 [CP017927]
1059913
1059838
-
Ala
GGC
-
¡û
>C181121208
CP025682
Betaproteobacteria
Pseudazoarcus pumilus SY39 [CP025682]
1975906
1975831
-
Ala
GGC
-
¡û
>C181163963
CP028324
Betaproteobacteria
Pseudoduganella armeniaca ZMN-3 [CP028324]
4522554
4522479
-
Ala
GGC
-
¡û
>C181195687
CP031112
Betaproteobacteria
Bordetella pertussis UK38 [CP031112]
2995372
2995447
+
Ala
GGC
-
¡û
>C181195736
CP031113
Betaproteobacteria
Bordetella pertussis UK39 [CP031113]
2995344
2995419
+
Ala
GGC
-
¡û
>C181198740
CP031289
Betaproteobacteria
Bordetella pertussis UK36 [CP031289]
2995283
2995358
+
Ala
GGC
-
¡û
>W1510132444
CFVN01000015
Betaproteobacteria
Burkholderia pseudomallei 10 [CFVN]
139378
139303
-
Ala
GGC
[ENA]
¡û
>W1510133533
CFWH01000424
Betaproteobacteria
Bordetella pertussis B101 [CFWH]
1320
1395
+
Ala
GGC
[ENA]
¡û
>W1510133577
CFWI01000645
Betaproteobacteria
Bordetella pertussis B278 [CFWI]
391
316
-
Ala
GGC
[ENA]
¡û
>W1510135906
CFYE01001060
Betaproteobacteria
Bordetella pertussis B054 [CFYE]
377
302
-
Ala
GGC
[ENA]
¡û
>W1510136379
CFYO01000537
Betaproteobacteria
Bordetella pertussis B049 [CFYO]
397
322
-
Ala
GGC
[ENA]
¡û
>W1510136661
CFYU01000345
Betaproteobacteria
Bordetella pertussis B073 [CFYU]
1324
1399
+
Ala
GGC
[ENA]
¡û
>W1510137213
CFZG01000526
Betaproteobacteria
Bordetella pertussis B023 [CFZG]
391
316
-
Ala
GGC
[ENA]
¡û
>W1510137281
CFZI01000015
Betaproteobacteria
Burkholderia pseudomallei C65 [CFZI]
24827
24902
+
Ala
GGC
[ENA]
¡û
>W1510138144
CGAA01000498
Betaproteobacteria
Bordetella pertussis B123 [CGAA]
1302
1377
+
Ala
GGC
[ENA]
¡û
>W1510138190
CGAB01000588
Betaproteobacteria
Bordetella pertussis B162 [CGAB]
1151
1226
+
Ala
GGC
[ENA]
¡û
>W1510182905
CHFE01000021
Betaproteobacteria
Burkholderia pseudomallei DC [CHFE]
24721
24796
+
Ala
GGC
[ENA]
¡û
>W1510183093
CHFI01000004
Betaproteobacteria
Burkholderia pseudomallei E0387 [CHFI]
193859
193934
+
Ala
GGC
[ENA]
¡û
>W1510208223
CIBC01000506
Betaproteobacteria
Bordetella pertussis B089 [CIBC]
1170
1245
+
Ala
GGC
[ENA]
¡û
>C161056227
CP013480
Betaproteobacteria
Pandoraea norimbergensis DSM 11628 [CP013480]
1335474
1335399
-
Ala
GGC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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