This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.358497 (17 seq.)
>W131036294
ALVM01000010
Cyanobacteriota
Leptolyngbya boryana PCC 6306 [ALVM]
4142428
4142499
+
Lys
TTT
[ENA]
¡û
>W1711460779
MJGC01000062
Cyanobacteriota
Desertifilum tharense IPPAS B-1220 [MJGC]
23139
23068
-
Lys
TTT
[ENA]
¡û
>C171000059
AP014638
Cyanobacteriota
Leptolyngbya boryana IAM M-101 [AP014638]
1978688
1978617
-
Lys
TTT
-
¡û
>C171000122
AP014642
Cyanobacteriota
Leptolyngbya boryana dg5 [AP014642]
1978688
1978617
-
Lys
TTT
-
¡û
>WENV170002217
AGSF01000837
[AGSF] microbial mat metagenome; purple microbial (photo and chemo synthetic) mats found in low oxygen high sulfur sink holes
12926
12855
-
Lys
TTT
[ENA]
¢þ
>WENV170002306
AGSF01009262
[AGSF] microbial mat metagenome; purple microbial (photo and chemo synthetic) mats found in low oxygen high sulfur sink holes
462
391
-
Lys
TTT
[ENA]
¢þ
>C181004828
AP018203
Cyanobacteriota
Leptolyngbya boryana NIES-2135 [AP018203]
4954257
4954328
+
Lys
TTT
-
¡û
>W1911426120
NXIB02000159
Cyanobacteriota
Tychonema bourrellyi FEM_GT703 [NXIB]
4348
4419
+
Lys
TTT
[ENA]
¡û
>W1810366289
PVWH01000128
Cyanobacteriota
filamentous cyanobacterium Phorm 46 [PVWH]
348
419
+
Lys
TTT
[ENA]
¡û
>W1810366337
PVWI01000041
Cyanobacteriota
filamentous cyanobacterium Phorm 6 [PVWI]
14135
14064
-
Lys
TTT
[ENA]
¡û
>W11164205
AFJC01000006
Cyanobacteriota
Microcoleus vaginatus FGP-2 [AFJC]
115258
115329
+
Lys
TTT
[ENA]
¡û
>C161002688
AP017308
Cyanobacteriota
Leptolyngbya sp. NIES-3755 [AP017308]
4625957
4625886
-
Lys
TTT
[Ensembl]
¡û
>W1610057092
BBWW01000001
Cyanobacteriota
Leptolyngbya sp. NIES-2104 [BBWW]
1506632
1506703
+
Lys
TTT
[ENA]
¡û
>C131004388
CP003591
Cyanobacteriota
Geitlerinema sp. PCC 7407 [CP003591]
1473705
1473776
+
Lys
TTT
[Ensembl]
¡û
>C131004879
CP003630
Cyanobacteriota
Allocoleopsis franciscana PCC 7113 [CP003630]
6457288
6457359
+
Lys
TTT
[Ensembl]
¡û
>C131004768
CP003614
Cyanobacteriota
Oscillatoria nigro-viridis PCC 7112 [CP003614]
4147073
4147144
+
Lys
TTT
[Ensembl]
¡û
>W1710053791
BBWW01000001
Cyanobacteriota
Leptolyngbya sp. NIES-2104 [BBWW]
1506632
1506703
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK