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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.358506 (78 seq.)
>W131158395
AQUA01000003
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
129251
129324
+
Arg
CCG
[ENA]
¡û
>W131158396
AQUA01000003
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
118057
117984
-
Arg
CCG
[ENA]
¡û
>W131162576
AQYZ01000007
Actinomycetota
actinobacterium SCGC AAA024-D14 [AQYZ]
7460
7388
-
Arg
CCG
[ENA]
¡û
>W131162956
AQZI01000004
Actinomycetota
actinobacterium SCGC AAA044-N04 [AQZI]
3547
3475
-
Arg
CCG
[ENA]
¡û
>W131183105
ARRO01000002
Actinomycetota
actinobacterium SCGC AAA027-M14 [ARRO]
94719
94645
-
Arg
CCG
[ENA]
¡û
>W1711328881
MBLN01000048
Actinomycetota
Pseudofrankia sp. EUN1h EUN1h [MBLN]
172760
172688
-
Arg
CCG
[ENA]
¡û
>W1711328952
MBLO01000158
Actinomycetota
Pseudofrankia sp. BMG5.36 BMG5.36 [MBLO]
166
94
-
Arg
CCG
[ENA]
¡û
>WENV016788
AACY020469946
Marine microbial communities from Global Ocean Sampling (GOS)
745
819
+
Arg
CCG
[ENA]
>WENV180103477
OAPA01046093
[OAPA] marine metagenome; ENVO:00002010
386
459
+
Arg
CCG
[ENA]
¢þ
>WENV180110762
OAPN01005975
[OAPN] marine metagenome; 2011
46
118
+
Arg
CCG
[ENA]
¢þ
>WENV180357456
OBNN01011627
[OBNN] marine metagenome; Coastal water
386
314
-
Arg
CCG
[ENA]
¢þ
>WENV180377247
OBON01005428
[OBON] marine metagenome; sea water
1203
1131
-
Arg
CCG
[ENA]
¢þ
>WENV181367243
OFPW01007944
[OFPW] freshwater metagenome; Freshwater Lake
225
297
+
Arg
CCG
[ENA]
¢þ
>WENV181368327
OFQL01000758
[OFQL] freshwater metagenome; Freshwater Lake
1536
1464
-
Arg
CCG
[ENA]
¢þ
>WENV181368913
OFQN01003467
[OFQN] freshwater metagenome; Freshwater Lake
415
487
+
Arg
CCG
[ENA]
¢þ
>WENV181369631
OFQP01013971
[OFQP] freshwater metagenome; Freshwater Lake
531
603
+
Arg
CCG
[ENA]
¢þ
>WENV181369851
OFQR01000730
[OFQR] freshwater metagenome; Freshwater Lake
338
266
-
Arg
CCG
[ENA]
¢þ
>WENV181370227
OFQS01000927
[OFQS] freshwater metagenome; Freshwater Lake
700
628
-
Arg
CCG
[ENA]
¢þ
>WENV181370260
OFQS01001294
[OFQS] freshwater metagenome; Freshwater Lake
1975
1903
-
Arg
CCG
[ENA]
¢þ
>WENV181385427
OFRI01085839
[OFRI] wastewater metagenome; Exp Tend VB 90WW
220
148
-
Arg
CCG
[ENA]
¢þ
>WENV181395758
OFSB01001756
[OFSB] freshwater metagenome; Freshwater Lake
1496
1568
+
Arg
CCG
[ENA]
¢þ
>WENV181395866
OFSB01012678
[OFSB] freshwater metagenome; Freshwater Lake
42
114
+
Arg
CCG
[ENA]
¢þ
>WENV181400422
OFSF01006202
[OFSF] wastewater metagenome; Exp Tend VB 100WW
1125
1053
-
Arg
CCG
[ENA]
¢þ
>WENV181400586
OFSF01011765
[OFSF] wastewater metagenome; Exp Tend VB 100WW
981
909
-
Arg
CCG
[ENA]
¢þ
>WENV181836108
OGVJ01000836
[OGVJ] freshwater metagenome; freshwater
3015
3087
+
Arg
CCG
[ENA]
¢þ
>WENV181836557
OGVJ01012170
[OGVJ] freshwater metagenome; freshwater
255
183
-
Arg
CCG
[ENA]
¢þ
>WENV181843301
OGVU01007487
[OGVU] freshwater metagenome; freshwater
1402
1330
-
Arg
CCG
[ENA]
¢þ
>WENV181843795
OGVU01065489
[OGVU] freshwater metagenome; freshwater
209
283
+
Arg
CCG
[ENA]
¢þ
>WENV181845577
OGVX01004446
[OGVX] freshwater metagenome; freshwater
1793
1865
+
Arg
CCG
[ENA]
¢þ
>WENV181853387
OGWI01003413
[OGWI] freshwater metagenome; freshwater
1776
1704
-
Arg
CCG
[ENA]
¢þ
>WENV181853389
OGWI01003434
[OGWI] freshwater metagenome; freshwater
820
892
+
Arg
CCG
[ENA]
¢þ
>WENV181855644
OGWM01000228
[OGWM] freshwater metagenome; freshwater
2337
2409
+
Arg
CCG
[ENA]
¢þ
>WENV001921
AACY020054124
Marine microbial communities from Global Ocean Sampling (GOS)
799
873
+
Arg
CCG
[ENA]
>WENV170572000
FLOH01000439
[FLOH] marine metagenome; water
14651
14579
-
Arg
CCG
[ENA]
¢þ
>WENV170620462
FUWD013032179
[FUWD] metagenome; unknown
1927
1855
-
Arg
CCG
[ENA]
¢þ
>WENV170621029
FUWD013046879
[FUWD] metagenome; unknown
1383
1455
+
Arg
CCG
[ENA]
¢þ
>WENV170628605
FUWD013249649
[FUWD] metagenome; unknown
1927
1855
-
Arg
CCG
[ENA]
¢þ
>WENV170629189
FUWD013263703
[FUWD] metagenome; unknown
1383
1455
+
Arg
CCG
[ENA]
¢þ
>WENV170645564
JNSK01000158
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
11723
11651
-
Arg
CCG
[ENA]
¢þ
>C181018673
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
576249
576177
-
Arg
CCG
-
¡û
>C181020889
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
976687
976759
+
Arg
CCG
-
¡û
>C181020963
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
983591
983663
+
Arg
CCG
-
¡û
>C181020999
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
978769
978841
+
Arg
CCG
-
¡û
>C181021035
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
944937
945009
+
Arg
CCG
-
¡û
>C181021073
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
939994
940066
+
Arg
CCG
-
¡û
>C181021105
CP016776
Actinomycetota
Candidatus Planktophila vernalis [CP016776]
1043497
1043569
+
Arg
CCG
-
¡û
>C181021147
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
962955
963027
+
Arg
CCG
-
¡û
>C181021183
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
942124
942196
+
Arg
CCG
-
¡û
>C181021297
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
906203
906275
+
Arg
CCG
-
¡û
>WENV022303
AACY020638627
Marine microbial communities from Global Ocean Sampling (GOS)
434
510
+
Arg
CCG
[ENA]
>W1810531643
QCXS01000002
Actinomycetota
Nakamurella deserti 12Sc4-1 [QCXS]
704005
703932
-
Arg
CCG
[ENA]
¡û
>WENV033848
AACY021560248
Marine microbial communities from Global Ocean Sampling (GOS)
695
771
+
Arg
CCG
[ENA]
>W10111550
ADDL01000041
Actinomycetota
Pseudofrankia inefficax EuI1c [ADDL]
30956
30884
-
Arg
CCG
[ENA]
¡û
>W10114055
ADGT01000043
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
26116
26188
+
Arg
CCG
[ENA]
¡û
>C11109227
CP002299
Actinomycetota
Pseudofrankia inefficax EuI1c [CP002299]
1150469
1150397
-
Arg
CCG
[Ensembl]
¡û
>WENV040581
AACY022093733
Marine microbial communities from Global Ocean Sampling (GOS)
606
532
-
Arg
CCG
[ENA]
>W11114477
ADDL01000041
Actinomycetota
Pseudofrankia inefficax EuI1c [ADDL]
30956
30884
-
Arg
CCG
[ENA]
¡û
>W11117391
ADGT01000043
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
26116
26188
+
Arg
CCG
[ENA]
¡û
>WENV042685
AACY022257809
Marine microbial communities from Global Ocean Sampling (GOS)
694
768
+
Arg
CCG
[ENA]
>W1511479811
JWIO01000003
Actinomycetota
Protofrankia coriariae BMG5.1 [JWIO]
239680
239608
-
Arg
CCG
[ENA]
¡û
>W1511573803
LANG01000006
Actinomycetota
Pseudofrankia sp. DC12 DC12 [LANG]
400102
400174
+
Arg
CCG
[ENA]
¡û
>WENV057371
AACY023292870
Marine microbial communities from Global Ocean Sampling (GOS)
539
613
+
Arg
CCG
[ENA]
>WENV057562
AACY023298994
Marine microbial communities from Global Ocean Sampling (GOS)
636
562
-
Arg
CCG
[ENA]
>WENV057776
AACY023306170
Marine microbial communities from Global Ocean Sampling (GOS)
629
703
+
Arg
CCG
[ENA]
>WENV057912
AACY023310841
Marine microbial communities from Global Ocean Sampling (GOS)
467
393
-
Arg
CCG
[ENA]
>WENV058211
AACY023321203
Marine microbial communities from Global Ocean Sampling (GOS)
1419
1493
+
Arg
CCG
[ENA]
>WENV058351
AACY023325920
Marine microbial communities from Global Ocean Sampling (GOS)
590
664
+
Arg
CCG
[ENA]
>WENV059108
AACY023353829
Marine microbial communities from Global Ocean Sampling (GOS)
790
716
-
Arg
CCG
[ENA]
>WENV005899
AACY020164715
Marine microbial communities from Global Ocean Sampling (GOS)
4255
4329
+
Arg
CCG
[ENA]
>WENV061332
AACY023429657
Marine microbial communities from Global Ocean Sampling (GOS)
1232
1306
+
Arg
CCG
[ENA]
>WENV061802
AACY023440944
Marine microbial communities from Global Ocean Sampling (GOS)
613
687
+
Arg
CCG
[ENA]
>WENV061983
AACY023445962
Marine microbial communities from Global Ocean Sampling (GOS)
341
415
+
Arg
CCG
[ENA]
>WENV006590
AACY020176188
Marine microbial communities from Global Ocean Sampling (GOS)
826
902
+
Arg
CCG
[ENA]
>WENV006631
AACY020177357
Marine microbial communities from Global Ocean Sampling (GOS)
1493
1567
+
Arg
CCG
[ENA]
>W1610625343
LIAM01000008
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
8510
8438
-
Arg
CCG
[ENA]
¡û
>WENV074937
AACY024005034
Marine microbial communities from Global Ocean Sampling (GOS)
81
7
-
Arg
CCG
[ENA]
>WENV074960
AACY024006374
Marine microbial communities from Global Ocean Sampling (GOS)
533
607
+
Arg
CCG
[ENA]
>W1710756470
LIAM01000008
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
8510
8438
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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