This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.358584 (60 seq.)
>WENV180287460
OBIK01066702
[OBIK] hydrothermal vent metagenome; sea water
79
153
+
Glu
TTC
[ENA]
¢þ
>WENV183707069
PDWI01006585
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4606
4680
+
Glu
TTC
[ENA]
¢þ
>WENV183707073
PDWI01006585
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
5091
5165
+
Glu
TTC
[ENA]
¢þ
>WENV183714098
PDWI01168230
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
22
96
+
Glu
TTC
[ENA]
¢þ
>WENV183714101
PDWI01168230
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
351
425
+
Glu
TTC
[ENA]
¢þ
>WENV170576118
FPIB01000026
[FPIB] hydrothermal vent metagenome genome assembly, contig: NODE_30.; water
143558
143632
+
Glu
TTC
[ENA]
¢þ
>WENV170576119
FPIB01000026
[FPIB] hydrothermal vent metagenome genome assembly, contig: NODE_30.; water
143666
143740
+
Glu
TTC
[ENA]
¢þ
>WENV170646509
JQGR01017733
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
12
86
+
Glu
TTC
[ENA]
¢þ
>C181196956
CP031217
Campylobacterota
Halarcobacter bivalviorum LMG 26154 [CP031217]
598873
598799
-
Glu
TTC
-
¡û
>C181196960
CP031217
Campylobacterota
Halarcobacter bivalviorum LMG 26154 [CP031217]
598517
598443
-
Glu
TTC
-
¡û
>C181197016
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
591271
591197
-
Glu
TTC
-
¡û
>C181197020
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
590923
590849
-
Glu
TTC
-
¡û
>C181197024
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
590574
590500
-
Glu
TTC
-
¡û
>C191084512
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
553252
553178
-
Glu
TTC
-
¡û
>C191084516
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
552908
552834
-
Glu
TTC
-
¡û
>C191084520
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
552564
552490
-
Glu
TTC
-
¡û
>C191084681
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
653288
653214
-
Glu
TTC
-
¡û
>C191084685
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
652885
652811
-
Glu
TTC
-
¡û
>C191084689
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
652470
652396
-
Glu
TTC
-
¡û
>C191147216
CP035928
Campylobacterota
Malaciobacter pacificus LMG 26638 [CP035928]
539982
539908
-
Glu
TTC
-
¡û
>C191147220
CP035928
Campylobacterota
Malaciobacter pacificus LMG 26638 [CP035928]
539623
539549
-
Glu
TTC
-
¡û
>W1911413062
NWVW01000011
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
47201
47127
-
Glu
TTC
[ENA]
¡û
>W1911413066
NWVW01000011
Campylobacterota
Malaciobacter canalis F138-33 [NWVW]
46797
46723
-
Glu
TTC
[ENA]
¡û
>W1911413105
NWVX01000015
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
16705
16631
-
Glu
TTC
[ENA]
¡û
>W1911413109
NWVX01000015
Campylobacterota
Malaciobacter marinus F140-37 [NWVX]
16301
16227
-
Glu
TTC
[ENA]
¡û
>W1911419356
NXAO01000009
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
28684
28610
-
Glu
TTC
[ENA]
¡û
>W1911419400
NXAO01000099
Campylobacterota
Malaciobacter marinus CECT 7727 [NXAO]
340
266
-
Glu
TTC
[ENA]
¡û
>W1911424167
NXFY01000005
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
150643
150717
+
Glu
TTC
[ENA]
¡û
>W1911424180
NXFY01000022
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
48758
48684
-
Glu
TTC
[ENA]
¡û
>W1911424207
NXFY01000113
Campylobacterota
Malaciobacter molluscorum CECT 7696 F98-3 [NXFY]
260
334
+
Glu
TTC
[ENA]
¡û
>W1911426248
NXIE01000008
Campylobacterota
Halarcobacter mediterraneus F156-34 [NXIE]
16442
16368
-
Glu
TTC
[ENA]
¡û
>W1911426252
NXIE01000008
Campylobacterota
Halarcobacter mediterraneus F156-34 [NXIE]
16087
16013
-
Glu
TTC
[ENA]
¡û
>W1911426266
NXIF01000017
Campylobacterota
Malaciobacter halophilus DSM 18005 [NXIF]
12779
12853
+
Glu
TTC
[ENA]
¡û
>W1911576162
PDJU01000012
Campylobacterota
Arcobacter sp. F155 [PDJU]
74007
73933
-
Glu
TTC
[ENA]
¡û
>W1911576166
PDJU01000012
Campylobacterota
Arcobacter sp. F155 [PDJU]
73645
73571
-
Glu
TTC
[ENA]
¡û
>W1911576292
PDJX01000007
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
556
482
-
Glu
TTC
[ENA]
¡û
>W1911576296
PDJX01000007
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
212
138
-
Glu
TTC
[ENA]
¡û
>W1911576308
PDJX01000020
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
51
125
+
Glu
TTC
[ENA]
¡û
>W1911576335
PDJX01000236
Campylobacterota
Malaciobacter molluscorum F91 [PDJX]
260
334
+
Glu
TTC
[ENA]
¡û
>W1911576352
PDJY01000033
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
30157
30083
-
Glu
TTC
[ENA]
¡û
>W1911576356
PDJY01000033
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
29754
29680
-
Glu
TTC
[ENA]
¡û
>W1911576360
PDJY01000033
Campylobacterota
Malaciobacter halophilus F166-45 [PDJY]
29339
29265
-
Glu
TTC
[ENA]
¡û
>W1911576563
PDKD01000194
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [PDKD]
106
32
-
Glu
TTC
[ENA]
¡û
>W1911576596
PDKE01000012
Campylobacterota
Arcobacter sp. CECT 8989 [PDKE]
73585
73511
-
Glu
TTC
[ENA]
¡û
>W1911576600
PDKE01000012
Campylobacterota
Arcobacter sp. CECT 8989 [PDKE]
73223
73149
-
Glu
TTC
[ENA]
¡û
>W1911576632
PDKF01000004
Campylobacterota
Arcobacter sp. CECT 8983 [PDKF]
236273
236199
-
Glu
TTC
[ENA]
¡û
>W1911576661
PDKG01000004
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
51
125
+
Glu
TTC
[ENA]
¡û
>W1911576666
PDKG01000005
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
205
131
-
Glu
TTC
[ENA]
¡û
>W1911576887
PDKL01000013
Campylobacterota
Halarcobacter bivalviorum F118-4 [PDKL]
72179
72105
-
Glu
TTC
[ENA]
¡û
>W1911576891
PDKL01000013
Campylobacterota
Halarcobacter bivalviorum F118-4 [PDKL]
71823
71749
-
Glu
TTC
[ENA]
¡û
>W1911576928
PDKM01000009
Campylobacterota
Halarcobacter bivalviorum CECT 7835 [PDKM]
72212
72138
-
Glu
TTC
[ENA]
¡û
>W1911576932
PDKM01000009
Campylobacterota
Halarcobacter bivalviorum CECT 7835 [PDKM]
71856
71782
-
Glu
TTC
[ENA]
¡û
>W1911576944
PDKN01000001
Campylobacterota
Candidatus Marinarcus aquaticus CECT 8987 [PDKN]
69698
69624
-
Glu
TTC
[ENA]
¡û
>W1911576947
PDKN01000001
Campylobacterota
Candidatus Marinarcus aquaticus CECT 8987 [PDKN]
69412
69338
-
Glu
TTC
[ENA]
¡û
>W1810295889
PTIW01000004
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
40094
40020
-
Glu
TTC
[ENA]
¡û
>W1810295893
PTIW01000004
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
39690
39616
-
Glu
TTC
[ENA]
¡û
>W1810295897
PTIW01000004
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
39273
39199
-
Glu
TTC
[ENA]
¡û
>W1710602821
FUYO01000004
Campylobacterota
Malaciobacter marinus [FUYO]
57678
57604
-
Glu
TTC
[ENA]
¡û
>W1710602825
FUYO01000004
Campylobacterota
Malaciobacter marinus [FUYO]
57277
57203
-
Glu
TTC
[ENA]
¡û
>W1710602829
FUYO01000004
Campylobacterota
Malaciobacter marinus [FUYO]
56865
56791
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK