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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.358658 (120 seq.)
>w017357
AARG01000008
Fusobacteriota
Fusobacterium polymorphum subsp. polymorphum ATCC 10953 [AARG]
90666
90743
+
His
GTG
[ENA]
¡û
>WENV180012330
FLSK01374353
[FLSK] metagenome; saliva
156
81
-
His
GTG
[ENA]
¢þ
>W141000229
ACIF01000048
Fusobacteriota
Fusobacterium periodonticum D10 [ACIF]
7793
7868
+
His
GTG
[ENA]
¡û
>WENV180439832
OBWT01029493
[OBWT] human gut metagenome; faeces
65
140
+
His
GTG
[ENA]
¢þ
>WENV180696468
ODCT01004636
[ODCT] human metagenome; G_DNA_Buccal mucosa
708
633
-
His
GTG
[ENA]
¢þ
>WENV180698544
ODDH01013494
[ODDH] human metagenome; G_DNA_Buccal mucosa
296
221
-
His
GTG
[ENA]
¢þ
>WENV180708661
ODFJ01004389
[ODFJ] human metagenome; G_DNA_Tongue dorsum
566
491
-
His
GTG
[ENA]
¢þ
>WENV180722358
ODGM01000160
[ODGM] human metagenome; G_DNA_Palatine Tonsils
7950
7875
-
His
GTG
[ENA]
¢þ
>WENV180724430
ODGR01000831
[ODGR] human metagenome; G_DNA_Tongue dorsum
3984
4059
+
His
GTG
[ENA]
¢þ
>WENV180750885
ODHS01011586
[ODHS] human metagenome; G_DNA_Supragingival plaque
68
143
+
His
GTG
[ENA]
¢þ
>WENV180757391
ODHW01000299
[ODHW] human metagenome; G_DNA_Tongue dorsum
39598
39523
-
His
GTG
[ENA]
¢þ
>WENV180758724
ODHX01008281
[ODHX] human metagenome; G_DNA_Buccal mucosa
504
429
-
His
GTG
[ENA]
¢þ
>WENV180759405
ODHY01010046
[ODHY] human metagenome; G_DNA_Buccal mucosa
330
405
+
His
GTG
[ENA]
¢þ
>WENV180765046
ODIB01014783
[ODIB] human metagenome; G_DNA_Supragingival plaque
597
672
+
His
GTG
[ENA]
¢þ
>WENV180775606
ODIK01001725
[ODIK] human metagenome; G_DNA_Tongue dorsum
2698
2773
+
His
GTG
[ENA]
¢þ
>WENV180777715
ODIL01060982
[ODIL] human metagenome; G_DNA_Supragingival plaque
80
155
+
His
GTG
[ENA]
¢þ
>WENV180779880
ODIN01022062
[ODIN] human metagenome; G_DNA_Throat
842
767
-
His
GTG
[ENA]
¢þ
>WENV180788443
ODIS01062029
[ODIS] human metagenome; G_DNA_Supragingival plaque
864
789
-
His
GTG
[ENA]
¢þ
>WENV180788679
ODIS01094908
[ODIS] human metagenome; G_DNA_Supragingival plaque
601
526
-
His
GTG
[ENA]
¢þ
>WENV180793123
ODIW01008646
[ODIW] human metagenome; G_DNA_Tongue dorsum
2700
2775
+
His
GTG
[ENA]
¢þ
>WENV180805114
ODJG01061898
[ODJG] human metagenome; G_DNA_Supragingival plaque
91
166
+
His
GTG
[ENA]
¢þ
>WENV180805663
ODJH01000102
[ODJH] human metagenome; G_DNA_Tongue dorsum
153
228
+
His
GTG
[ENA]
¢þ
>WENV180807549
ODJI01003819
[ODJI] human metagenome; G_DNA_Tongue dorsum
5579
5504
-
His
GTG
[ENA]
¢þ
>W141079050
ATKG01000125
Fusobacteriota
Fusobacterium hwasookii ChDC F300 [ATKG]
164
89
-
His
GTG
[ENA]
¡û
>WENV180809228
ODJK01007876
[ODJK] human metagenome; G_DNA_Subgingival plaque
2863
2938
+
His
GTG
[ENA]
¢þ
>WENV180810246
ODJK01176313
[ODJK] human metagenome; G_DNA_Subgingival plaque
251
176
-
His
GTG
[ENA]
¢þ
>WENV180810370
ODJK01254067
[ODJK] human metagenome; G_DNA_Subgingival plaque
157
82
-
His
GTG
[ENA]
¢þ
>WENV180813625
ODJO01001485
[ODJO] human metagenome; G_DNA_Supragingival plaque
8954
9029
+
His
GTG
[ENA]
¢þ
>WENV180815567
ODJP01000759
[ODJP] human metagenome; G_DNA_Tongue dorsum
2801
2876
+
His
GTG
[ENA]
¢þ
>WENV180821675
ODJS01034233
[ODJS] human metagenome; G_DNA_Tongue dorsum
89
164
+
His
GTG
[ENA]
¢þ
>WENV180823628
ODJW01080883
[ODJW] human metagenome; G_DNA_Supragingival plaque
251
176
-
His
GTG
[ENA]
¢þ
>WENV180823826
ODJW01199894
[ODJW] human metagenome; G_DNA_Supragingival plaque
133
58
-
His
GTG
[ENA]
¢þ
>WENV180824196
ODJX01001391
[ODJX] human metagenome; G_DNA_Supragingival plaque
5665
5590
-
His
GTG
[ENA]
¢þ
>WENV180832487
ODKC01001882
[ODKC] human metagenome; G_DNA_Supragingival plaque
13315
13240
-
His
GTG
[ENA]
¢þ
>WENV180833045
ODKC01012256
[ODKC] human metagenome; G_DNA_Supragingival plaque
225
300
+
His
GTG
[ENA]
¢þ
>WENV180834363
ODKD01015409
[ODKD] human metagenome; G_DNA_Supragingival plaque
390
315
-
His
GTG
[ENA]
¢þ
>WENV180836257
ODKE01081885
[ODKE] human metagenome; G_DNA_Supragingival plaque
133
58
-
His
GTG
[ENA]
¢þ
>WENV180841709
ODKK01002351
[ODKK] human metagenome; G_DNA_Buccal mucosa
1196
1271
+
His
GTG
[ENA]
¢þ
>WENV180844649
ODKN01273575
[ODKN] human metagenome; G_DNA_Supragingival plaque
5
80
+
His
GTG
[ENA]
¢þ
>WENV180846213
ODKT01007015
[ODKT] human metagenome; G_DNA_Supragingival plaque
4363
4438
+
His
GTG
[ENA]
¢þ
>WENV180857274
ODLA01027026
[ODLA] human metagenome; G_DNA_Buccal mucosa
51
126
+
His
GTG
[ENA]
¢þ
>WENV180860485
ODLD01104083
[ODLD] human metagenome; G_DNA_Supragingival plaque
251
176
-
His
GTG
[ENA]
¢þ
>WENV180861362
ODLE01003151
[ODLE] human metagenome; G_DNA_Tongue dorsum
92
167
+
His
GTG
[ENA]
¢þ
>WENV180866174
ODLJ01006209
[ODLJ] human metagenome; G_DNA_Tongue dorsum
2665
2740
+
His
GTG
[ENA]
¢þ
>WENV180873307
ODLP01003283
[ODLP] human metagenome; G_DNA_Tongue dorsum
2952
2877
-
His
GTG
[ENA]
¢þ
>WENV180877694
ODLV01001364
[ODLV] human metagenome; G_DNA_Tongue dorsum
5615
5540
-
His
GTG
[ENA]
¢þ
>WENV180881241
ODLZ01253485
[ODLZ] human metagenome; G_DNA_Tongue dorsum
69
144
+
His
GTG
[ENA]
¢þ
>WENV180882256
ODMB01078685
[ODMB] human metagenome; G_DNA_Buccal mucosa
133
58
-
His
GTG
[ENA]
¢þ
>WENV180884294
ODMC01076632
[ODMC] human metagenome; G_DNA_Tongue dorsum
395
320
-
His
GTG
[ENA]
¢þ
>WENV180888702
ODMN01002627
[ODMN] human metagenome; G_DNA_Supragingival plaque
2988
2913
-
His
GTG
[ENA]
¢þ
>WENV180889536
ODMN01057520
[ODMN] human metagenome; G_DNA_Supragingival plaque
158
233
+
His
GTG
[ENA]
¢þ
>WENV180890912
ODMO01024564
[ODMO] human metagenome; G_DNA_Tongue dorsum
729
654
-
His
GTG
[ENA]
¢þ
>WENV180899811
ODOJ01000055
[ODOJ] human metagenome; G_DNA_Tongue dorsum
95766
95691
-
His
GTG
[ENA]
¢þ
>WENV180920287
ODTH01003089
[ODTH] human metagenome; G_DNA_Tongue dorsum
4233
4308
+
His
GTG
[ENA]
¢þ
>WENV180945358
ODUC01124755
[ODUC] human metagenome; G_DNA_Supragingival plaque
368
293
-
His
GTG
[ENA]
¢þ
>WENV180959833
ODUM01003828
[ODUM] human metagenome; G_DNA_Tongue dorsum
36
111
+
His
GTG
[ENA]
¢þ
>WENV180968204
ODUT01013368
[ODUT] human metagenome; G_DNA_Tongue dorsum
1958
1883
-
His
GTG
[ENA]
¢þ
>WENV180974743
ODUX01085853
[ODUX] human metagenome; G_DNA_Buccal mucosa
131
56
-
His
GTG
[ENA]
¢þ
>WENV180978125
ODUZ01019982
[ODUZ] human metagenome; G_DNA_Tongue dorsum
1032
957
-
His
GTG
[ENA]
¢þ
>WENV180981917
ODVE01085973
[ODVE] human metagenome; G_DNA_Supragingival plaque
371
296
-
His
GTG
[ENA]
¢þ
>WENV180983960
ODVF01070127
[ODVF] human metagenome; G_DNA_Supragingival plaque
84
159
+
His
GTG
[ENA]
¢þ
>WENV180990740
ODVN01004194
[ODVN] human metagenome; G_DNA_Tongue dorsum
7
82
+
His
GTG
[ENA]
¢þ
>WENV181002736
ODVX01001446
[ODVX] human metagenome; G_DNA_Supragingival plaque
11100
11025
-
His
GTG
[ENA]
¢þ
>WENV181011311
ODWI01018795
[ODWI] human metagenome; G_DNA_Tongue dorsum
422
347
-
His
GTG
[ENA]
¢þ
>WENV181016885
ODWR01011014
[ODWR] human metagenome; G_DNA_Tongue dorsum
336
261
-
His
GTG
[ENA]
¢þ
>WENV181019605
ODWU01007381
[ODWU] human metagenome; G_DNA_Supragingival plaque
3423
3348
-
His
GTG
[ENA]
¢þ
>WENV181041096
ODXS01004037
[ODXS] human metagenome; G_DNA_Tongue dorsum
5396
5471
+
His
GTG
[ENA]
¢þ
>WENV181044161
ODXV01003624
[ODXV] human metagenome; G_DNA_Tongue dorsum
1032
957
-
His
GTG
[ENA]
¢þ
>WENV181049856
ODYD01002743
[ODYD] human metagenome; G_DNA_Supragingival plaque
3210
3285
+
His
GTG
[ENA]
¢þ
>WENV181059303
ODYM01000510
[ODYM] human metagenome; G_DNA_Tongue dorsum
8270
8195
-
His
GTG
[ENA]
¢þ
>WENV181063968
ODYP01006772
[ODYP] human metagenome; G_DNA_Supragingival plaque
371
296
-
His
GTG
[ENA]
¢þ
>WENV181076225
OEAP01002771
[OEAP] human metagenome; G_DNA_Supragingival plaque
3902
3977
+
His
GTG
[ENA]
¢þ
>WENV181077654
OEAP01100134
[OEAP] human metagenome; G_DNA_Supragingival plaque
375
300
-
His
GTG
[ENA]
¢þ
>WENV181083209
OEAV01003221
[OEAV] human metagenome; G_DNA_Supragingival plaque
6307
6232
-
His
GTG
[ENA]
¢þ
>WENV181083285
OEAV01004361
[OEAV] human metagenome; G_DNA_Supragingival plaque
369
294
-
His
GTG
[ENA]
¢þ
>WENV181083448
OEAV01007657
[OEAV] human metagenome; G_DNA_Supragingival plaque
369
294
-
His
GTG
[ENA]
¢þ
>WENV181087362
OEAY01032617
[OEAY] human metagenome; G_DNA_Tongue dorsum
437
512
+
His
GTG
[ENA]
¢þ
>WENV181096060
OEBY01045956
[OEBY] human metagenome; G_DNA_Tongue dorsum
152
227
+
His
GTG
[ENA]
¢þ
>WENV181097008
OECA01001572
[OECA] human metagenome; G_DNA_Tongue dorsum
5651
5576
-
His
GTG
[ENA]
¢þ
>WENV181104129
OECV01087631
[OECV] human metagenome; G_DNA_Throat
85
160
+
His
GTG
[ENA]
¢þ
>WENV181105704
OEED01012266
[OEED] human metagenome; G_DNA_Tongue dorsum
2476
2401
-
His
GTG
[ENA]
¢þ
>WENV181108432
OEEJ01000022
[OEEJ] human metagenome; G_DNA_Tongue dorsum
96092
96167
+
His
GTG
[ENA]
¢þ
>WENV181129952
OEFY01000125
[OEFY] human metagenome; G_DNA_Throat
24171
24246
+
His
GTG
[ENA]
¢þ
>WENV181136605
OEGI01017653
[OEGI] human metagenome; G_DNA_Supragingival plaque
981
906
-
His
GTG
[ENA]
¢þ
>WENV181137541
OEGJ01006427
[OEGJ] human metagenome; G_DNA_Supragingival plaque
2795
2870
+
His
GTG
[ENA]
¢þ
>WENV181143468
OEHM01001075
[OEHM] human metagenome; G_DNA_Supragingival plaque
9506
9581
+
His
GTG
[ENA]
¢þ
>WENV181150599
OEHW01003737
[OEHW] human metagenome; G_DNA_Tongue dorsum
542
467
-
His
GTG
[ENA]
¢þ
>WENV181153022
OEIA01015345
[OEIA] human metagenome; G_DNA_Supragingival plaque
471
546
+
His
GTG
[ENA]
¢þ
>WENV181153206
OEIA01031164
[OEIA] human metagenome; G_DNA_Supragingival plaque
85
160
+
His
GTG
[ENA]
¢þ
>WENV181157484
OEIG01007878
[OEIG] human metagenome; G_DNA_Hard palate
1920
1995
+
His
GTG
[ENA]
¢þ
>WENV181160369
OEIK01006725
[OEIK] human metagenome; G_DNA_Supragingival plaque
181
256
+
His
GTG
[ENA]
¢þ
>WENV181177057
OEJR01150989
[OEJR] human metagenome; G_DNA_Saliva
133
58
-
His
GTG
[ENA]
¢þ
>WENV181182751
OEJV01038701
[OEJV] human metagenome; G_DNA_Supragingival plaque
466
541
+
His
GTG
[ENA]
¢þ
>WENV181429960
OGCY01015929
[OGCY] metagenome; Human gut stool
301
376
+
His
GTG
[ENA]
¢þ
>WENV181547904
OGIJ01001251
[OGIJ] metagenome; Human gut stool
7549
7474
-
His
GTG
[ENA]
¢þ
>WENV181582513
OGKB01011886
[OGKB] metagenome; Human gut stool
745
670
-
His
GTG
[ENA]
¢þ
>WENV181867952
OGWW01005813
[OGWW] human gut metagenome; faeces
3590
3515
-
His
GTG
[ENA]
¢þ
>WENV182433626
OIIU01003101
[OIIU] human gut metagenome; human gut
366
441
+
His
GTG
[ENA]
¢þ
>W141286789
JAOZ01000016
Fusobacteriota
Fusobacterium nucleatum 13_3C [JAOZ]
365304
365379
+
His
GTG
[ENA]
¡û
>W141288825
JAQC01000015
Fusobacteriota
Fusobacterium sp. CM22 [JAQC]
11697
11622
-
His
GTG
[ENA]
¡û
>WENV183507940
OMGZ01001297
[OMGZ] human oral metagenome; human oral
779
704
-
His
GTG
[ENA]
¢þ
>WENV183509299
OMHH01006940
[OMHH] human oral metagenome; human oral
39
114
+
His
GTG
[ENA]
¢þ
>WENV183764182
PPYE01318866
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
518
593
+
His
GTG
[ENA]
¢þ
>C181058844
CP022123
Fusobacteriota
Fusobacterium polymorphum KCOM 1275 [CP022123]
1967067
1967142
+
His
GTG
-
¡û
>C181103967
CP024698
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1283 [CP024698]
1178576
1178651
+
His
GTG
-
¡û
>C181104012
CP024699
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1261 [CP024699]
1601681
1601756
+
His
GTG
-
¡û
>C181104105
CP024701
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1277 [CP024701]
2222674
2222749
+
His
GTG
-
¡û
>C181104181
CP024702
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1282 [CP024702]
1832304
1832229
-
His
GTG
-
¡û
>C181161199
CP028108
Fusobacteriota
Fusobacterium periodonticum 2_1_31 [CP028108]
2301807
2301882
+
His
GTG
-
¡û
>W1910928810
NIRJ01000001
Fusobacteriota
Fusobacterium polymorphum [NIRJ]
695528
695603
+
His
GTG
[ENA]
¡û
>W1910928976
NIRM01000004
Fusobacteriota
Fusobacterium polymorphum [NIRM]
111224
111299
+
His
GTG
[ENA]
¡û
>W1910929103
NIRP01000002
Fusobacteriota
Fusobacterium polymorphum [NIRP]
88750
88675
-
His
GTG
[ENA]
¡û
>W1810084360
PEQY01000001
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1259 [PEQY]
555681
555606
-
His
GTG
[ENA]
¡û
>W1810679126
QKOC01000030
Fusobacteriota
Fusobacterium nucleatum 12230 [QKOC]
4459
4534
+
His
GTG
[ENA]
¡û
>W10113591
ADGG01000051
Fusobacteriota
Fusobacterium periodonticum 1_1_41FAA [ADGG]
42069
41994
-
His
GTG
[ENA]
¡û
>W11116880
ADGG01000051
Fusobacteriota
Fusobacterium periodonticum 1_1_41FAA [ADGG]
42069
41994
-
His
GTG
[ENA]
¡û
>C161051455
CP013121
Fusobacteriota
Fusobacterium polymorphum ChDC F306 [CP013121]
2285538
2285613
+
His
GTG
-
¡û
>C161055412
CP013334
Fusobacteriota
Fusobacterium hwasookii ChDC F300 [CP013334]
1848114
1848039
-
His
GTG
[Ensembl]
¡û
>C161055446
CP013336
Fusobacteriota
Fusobacterium hwasookii ChDC F206 [CP013336]
760177
760252
+
His
GTG
-
¡û
>C161106047
LN831027
Fusobacteriota
Fusobacterium polymorphum NCTC10562 [LN831027]
197469
197544
+
His
GTG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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