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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.358753 (6 seq.)
>W1910717759
MFZE01000002
Unclassified
Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_01_FULL_38_41 [MFZE]
9163
9091
-
Cys
GCA
[ENA]
¡û
>W1910718067
MFZM01000001
Unclassified
Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_02_FULL_37_24 [MFZM]
9160
9088
-
Cys
GCA
[ENA]
¡û
>W1910718460
MFZX01000026
Unclassified
Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_12_FULL_37_23 [MFZX]
14407
14479
+
Cys
GCA
[ENA]
¡û
>W1910718838
MGAJ01000005
Unclassified
Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_01_FULL_37_57 [MGAJ]
9169
9097
-
Cys
GCA
[ENA]
¡û
>W1910719264
MGAW01000031
Unclassified
Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_02_FULL_37_19 [MGAW]
32556
32484
-
Cys
GCA
[ENA]
¡û
>W1910719481
MGBD01000015
Unclassified
Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_12_FULL_37_7b [MGBD]
42171
42099
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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