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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.359116 (50 seq.)
>W131170941
ARFV01000080
Actinomycetota
Actinokineospora enzanensis DSM 44649 [ARFV]
39174
39100
-
Val
TAC
[ENA]
¡û
>W1711190861
LWSF01000025
Actinomycetota
Amycolatopsis sp. M39 [LWSF]
113198
113272
+
Val
TAC
[ENA]
¡û
>W131222159
AUBB01000005
Actinomycetota
Pseudonocardia spinosispora DSM 44797 [AUBB]
514934
515008
+
Val
TAC
[ENA]
¡û
>W1711386144
MEEZ01000004
Actinomycetota
Pseudonocardia sp. SCN 72-51 [MEEZ]
1030
1104
+
Val
TAC
[ENA]
¡û
>W1711387135
MEGH01000031
Actinomycetota
Pseudonocardia sp. SCN 73-27 [MEGH]
55030
54956
-
Val
TAC
[ENA]
¡û
>W131100472
AOUO01000241
Actinomycetota
Amycolatopsis vancoresmycina DSM 44592 [AOUO]
9460
9534
+
Val
TAC
[ENA]
¡û
>W1711499927
MKQR01000003
Actinomycetota
Actinokineospora bangkokensis [MKQR]
5206
5278
+
Val
TAC
[ENA]
¡û
>W1711749245
MUMI01000580
Actinomycetota
Amycolatopsis kentuckyensis [MUMI]
18587
18661
+
Val
TAC
[ENA]
¡û
>W1711749303
MUMK01000032
Actinomycetota
Amycolatopsis pretoriensis [MUMK]
14786
14712
-
Val
TAC
[ENA]
¡û
>C171033882
CP014859
Actinomycetota
Actinoalloteichus hymeniacidonis HPA177 [CP014859]
5213928
5213856
-
Val
TAC
-
¡û
>C171045488
CP016076
Actinomycetota
Actinoalloteichus fjordicus ADI127-7 [CP016076]
5989534
5989460
-
Val
TAC
-
¡û
>C171045535
CP016077
Actinomycetota
Actinoalloteichus sp. GBA129-24 [CP016077]
6087847
6087773
-
Val
TAC
-
¡û
>W131202793
ASXG01000104
Actinomycetota
Amycolatopsis orientalis DSM 43388 [ASXG]
4792
4718
-
Val
TAC
[ENA]
¡û
>W131202859
ASXH01000126
Actinomycetota
Amycolatopsis orientalis DSM 46075 [ASXH]
8404
8330
-
Val
TAC
[ENA]
¡û
>WENV181155477
OEID01192903
[OEID] soil metagenome; soil
23
97
+
Val
TAC
[ENA]
¢þ
>W141170088
AXWW01000054
Actinomycetota
Actinokineospora inagensis DSM 44258 [AXWW]
48097
48171
+
Val
TAC
[ENA]
¡û
>W141199769
AYXG01000111
Actinomycetota
Actinokineospora spheciospongiae EG49 [AYXG]
32683
32609
-
Val
TAC
[ENA]
¡û
>W09120719
ACEV01000017
Actinomycetota
Streptomyces sp. AA4 [ACEV]
38083
38157
+
Val
TAC
[ENA]
¡û
>C181016795
CP015163
Actinomycetota
Amycolatopsis albispora WP1 [CP015163]
3919033
3918960
-
Val
TAC
-
¡û
>C181067268
CP022521
Actinomycetota
Actinoalloteichus hoggarensis DSM 45943 [CP022521]
5488489
5488415
-
Val
TAC
-
¡û
>C181107773
CP024894
Actinomycetota
Amycolatopsis sp. AA4 [CP024894]
1797163
1797237
+
Val
TAC
-
¡û
>W141563873
JIAI01000002
Actinomycetota
Pseudonocardia acaciae DSM 45401 [JIAI]
188348
188420
+
Val
TAC
[ENA]
¡û
>W141712025
JMQG01000097
Actinomycetota
Amycolatopsis mediterranei [JMQG]
47745
47671
-
Val
TAC
[ENA]
¡û
>W141712120
JMQI01000042
Actinomycetota
Amycolatopsis rifamycinica [JMQI]
25409
25335
-
Val
TAC
[ENA]
¡û
>W141712201
JMQJ01000104
Actinomycetota
Amycolatopsis mediterranei [JMQJ]
47745
47671
-
Val
TAC
[ENA]
¡û
>W141758995
JNYZ01000037
Actinomycetota
Amycolatopsis jejuensis [JNYZ]
115928
116002
+
Val
TAC
[ENA]
¡û
>W141773741
JOIQ01000041
Actinomycetota
Streptomyces sp. NRRL F-3213 [JOIQ]
28025
28099
+
Val
TAC
[ENA]
¡û
>W1910038440
BEGX01000114
Actinomycetota
Pseudonocardia sp. N23 [BEGX]
31117
31043
-
Val
TAC
[ENA]
¡û
>C141001873
CP003777
Actinomycetota
Amycolatopsis mediterranei RB [CP003777]
2270128
2270202
+
Val
TAC
[Ensembl]
¡û
>W1910994816
NKYE01000022
Actinomycetota
Amycolatopsis antarctica AU-G6 [NKYE]
102452
102526
+
Val
TAC
[ENA]
¡û
>W1911814709
QZFV01000099
Actinomycetota
Amycolatopsis panacis YIM PH 21725 [QZFV]
38447
38520
+
Val
TAC
[ENA]
¡û
>W1810058401
PDJK01000002
Actinomycetota
Amycolatopsis sulphurea DSM 46092 [PDJK]
371004
370930
-
Val
TAC
[ENA]
¡û
>W1810173317
PJMY01000003
Actinomycetota
Amycolatopsis niigatensis DSM 45165 [PJMY]
776260
776187
-
Val
TAC
[ENA]
¡û
>W1810176400
PJPW02000080
Actinomycetota
Pseudonocardia dioxanivorans BERK-1 [PJPW]
5879
5953
+
Val
TAC
[ENA]
¡û
>W1810237664
PPHG01000056
Actinomycetota
Amycolatopsis sp. CA-128772 [PPHG]
32038
31965
-
Val
TAC
[ENA]
¡û
>W1810295955
PTIX01000004
Actinomycetota
Actinokineospora auranticolor YU 961-1 [PTIX]
498537
498609
+
Val
TAC
[ENA]
¡û
>W1810623470
QHCP01000009
Actinomycetota
Actinokineospora spheciospongiae CECT 8578 [QHCP]
86781
86855
+
Val
TAC
[ENA]
¡û
>C10100509
CP002000
Actinomycetota
Amycolatopsis mediterranei U32 [CP002000]
2261088
2261162
+
Val
TAC
[Ensembl]
¡û
>C11100900
CP002896
Actinomycetota
Amycolatopsis mediterranei S699 [CP002896]
2261109
2261183
+
Val
TAC
-
¡û
>C11117077
CP002593
Actinomycetota
Pseudonocardia dioxanivorans CB1190 [CP002593]
2286836
2286910
+
Val
TAC
[Ensembl]
¡û
>C121015461
CP003729
Actinomycetota
Amycolatopsis mediterranei S699 [CP003729]
2270167
2270241
+
Val
TAC
-
¡û
>W1610992464
LWSF01000025
Actinomycetota
Amycolatopsis sp. M39 [LWSF]
113198
113272
+
Val
TAC
[ENA]
¡û
>W1710513208
FMZZ01000003
Actinomycetota
Actinokineospora iranica iranicum [FMZZ]
64470
64542
+
Val
TAC
[ENA]
¡û
>W1710518133
FNDV01000002
Actinomycetota
Actinokineospora alba album [FNDV]
858688
858762
+
Val
TAC
[ENA]
¡û
>W1710524856
FNJB01000003
Actinomycetota
Actinokineospora alba album [FNJB]
216939
216865
-
Val
TAC
[ENA]
¡û
>W1710535470
FNSO01000004
Actinomycetota
Amycolatopsis tolypomycina [FNSO]
718476
718550
+
Val
TAC
[ENA]
¡û
>W1710538226
FNUJ01000008
Actinomycetota
Amycolatopsis pretoriensis [FNUJ]
23332
23258
-
Val
TAC
[ENA]
¡û
>W1710551742
FOGI01000004
Actinomycetota
Actinokineospora terrae [FOGI]
390844
390770
-
Val
TAC
[ENA]
¡û
>W1710571693
FOWC01000021
Actinomycetota
Amycolatopsis rubida [FOWC]
9163
9089
-
Val
TAC
[ENA]
¡û
>W1710628097
JPRA01000072
Actinomycetota
Amycolatopsis mediterranei [JPRA]
154580
154654
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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