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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.359155 (8 seq.)
>C181185293
CP029797
Bacillota
Paraliobacillus zengyii X-1125 [CP029797]
1003922
1003993
+
Val
GAC
-
¡û
>W1910438178
FVZO01000016
Bacillota
Paraliobacillus ryukyuensis Marseille-P3391 [FVZO]
315747
315818
+
Val
GAC
[ENA]
¡û
>W1810670848
QJSH01000004
Bacillota
Paraliobacillus quinghaiensis YIM-C158 [QJSH]
37706
37633
-
Val
GAC
[ENA]
¡û
>W1810670930
QJSI01000004
Bacillota
Paraliobacillus sediminis 126C4 [QJSI]
240439
240512
+
Val
GAC
[ENA]
¡û
>W1810670981
QJSJ01000023
Bacillota
Paraliobacillus zengyii X-1174 [QJSJ]
13002
13073
+
Val
GAC
[ENA]
¡û
>W1810671011
QJSK01000016
Bacillota
Paraliobacillus sp. X-1268 [QJSK]
55069
54998
-
Val
GAC
[ENA]
¡û
>W1810720515
QNRI01000005
Bacillota
Paraliobacillus ryukyuensis DSM 15140 [QNRI]
9935
9864
-
Val
GAC
[ENA]
¡û
>W1510562656
CTEI01000002
Bacillota
Paraliobacillus sp. PM-2 [CTEI]
451133
451060
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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