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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.359232 (10 seq.)
>W131158408
AQUA01000006
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
53812
53736
-
Trp
CCA
[ENA]
¡û
>WENV181843194
OGVU01002748
[OGVU] freshwater metagenome; freshwater
1616
1542
-
Trp
CCA
[ENA]
¢þ
>WENV181856685
OGWN01009111
[OGWN] freshwater metagenome; freshwater
448
374
-
Trp
CCA
[ENA]
¢þ
>C181018654
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
432300
432374
+
Trp
CCA
-
¡û
>C181020903
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
1120484
1120410
-
Trp
CCA
-
¡û
>C181020977
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
1133774
1133700
-
Trp
CCA
-
¡û
>C181021013
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
1116459
1116385
-
Trp
CCA
-
¡û
>C181021161
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
1106752
1106678
-
Trp
CCA
-
¡û
>WENV058028
AACY023314991
Marine microbial communities from Global Ocean Sampling (GOS)
577
501
-
Trp
CCA
[ENA]
>WENV058173
AACY023320003
Marine microbial communities from Global Ocean Sampling (GOS)
1104
1180
+
Trp
CCA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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