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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.359754 (22 seq.)
>W1710785500
LJHX01000085
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
31086
31012
-
Val
TAC
[ENA]
¡û
>C171074565
CP018190
Alphaproteobacteria
Granulibacter bethesdensis NIH5.1 [CP018190]
1447078
1447004
-
Val
TAC
-
¡û
>C171074617
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
1485836
1485762
-
Val
TAC
-
¡û
>C171074669
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
1443568
1443494
-
Val
TAC
-
¡û
>C171074721
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
1439321
1439247
-
Val
TAC
-
¡û
>C171074773
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
1485837
1485763
-
Val
TAC
-
¡û
>C171074825
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
1447173
1447099
-
Val
TAC
-
¡û
>C000484
CP000697
Alphaproteobacteria
Acidiphilium cryptum JF-5 [CP000697]
1024118
1024189
+
Val
TAC
[Ensembl]
¡û
>C009847
CP000394
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH1 [CP000394]
1447131
1447057
-
Val
TAC
[Ensembl]
¡û
>WENV180018083
FSYC01000400
[FSYC] metagenome; soil
4522
4596
+
Val
TAC
[ENA]
¢þ
>WENV183664090
ORJL010343007
[ORJL] groundwater metagenome; groundwater
2260
2334
+
Val
TAC
[ENA]
¢þ
>WENV183692215
ORMF011880773
[ORMF] groundwater metagenome; groundwater
400
326
-
Val
TAC
[ENA]
¢þ
>W09105131
AAOO01000019
Alphaproteobacteria
Acidiphilium cryptum JF-5 [AAOO]
4999
5070
+
Val
TAC
[ENA]
¡û
>W141462239
JFHO01000030
Alphaproteobacteria
Acidiphilium sp. JA12-A1 [JFHO]
32578
32507
-
Val
TAC
[ENA]
¡û
>C151004037
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
1443740
1443666
-
Val
TAC
[Ensembl]
¡û
>C151004073
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
1979896
1979970
+
Val
TAC
[Ensembl]
¡û
>C151004125
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
1968676
1968750
+
Val
TAC
[Ensembl]
¡û
>C11100977
AP012035
Alphaproteobacteria
Acidiphilium multivorum AIU301 [AP012035]
1098816
1098745
-
Val
TAC
[Ensembl]
¡û
>W11170625
AFPR01000111
Alphaproteobacteria
Acidiphilium sp. PM [AFPR]
24411
24340
-
Val
TAC
[ENA]
¡û
>W1610040946
BANA01000012
Alphaproteobacteria
Acidiphilium multivorum AIU301 [BANA]
49220
49149
-
Val
TAC
[ENA]
¡û
>W1610649306
LJHX01000085
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
31086
31012
-
Val
TAC
[ENA]
¡û
>W1710038144
BANA01000012
Alphaproteobacteria
Acidiphilium multivorum AIU301 [BANA]
49220
49149
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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