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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.359774 (45 seq.)
>W1710785179
LJHQ01000011
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
115632
115558
-
Thr
TGT
[ENA]
¡û
>W1710796549
LJSD01000062
Alphaproteobacteria
Mesorhizobium sp. 1M-11 [LJSD]
12422
12496
+
Thr
TGT
[ENA]
¡û
>W1710869645
LMJW01000022
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
286621
286695
+
Thr
TGT
[ENA]
¡û
>W1710879522
LMRT01000013
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
691728
691654
-
Thr
TGT
[ENA]
¡û
>W1711074512
LSJP01000251
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
8297
8223
-
Thr
TGT
[ENA]
¡û
>W1711074721
LSJU01000489
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
4183
4257
+
Thr
TGT
[ENA]
¡û
>W1711074862
LSJX01000203
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
8290
8216
-
Thr
TGT
[ENA]
¡û
>W1711501247
MKRJ01000052
Alphaproteobacteria
Rhizobiales bacterium 65-79 [MKRJ]
3217
3291
+
Thr
TGT
[ENA]
¡û
>W1711502240
MKSM01000064
Alphaproteobacteria
Nitrobacter sp. 62-23 [MKSM]
30781
30707
-
Thr
TGT
[ENA]
¡û
>W1711504920
MKVA01000005
Alphaproteobacteria
Devosia sp. 67-54 [MKVA]
981630
981556
-
Thr
TGT
[ENA]
¡û
>PL171001255
CP016463
Alphaproteobacteria
Bosea sp. RAC05 plasmid:pBSY19_1
438300
438226
-
Thr
TGT
[ENA]
¡û
>W131235092
AULH01000006
Alphaproteobacteria
Pleomorphomonas koreensis DSM 23070 [AULH]
183119
183045
-
Thr
TGT
[ENA]
¡û
>C014931
CP000319
Alphaproteobacteria
Nitrobacter hamburgensis X14 [CP000319]
2765240
2765314
+
Thr
TGT
[Ensembl]
¡û
>W141007519
AGWZ01000001
Alphaproteobacteria
Afipia felis ATCC 53690 [AGWZ]
250642
250716
+
Thr
TGT
[ENA]
¡û
>WENV181402675
OFTY01016540
[OFTY] sludge metagenome; sludge
73
1
-
Thr
TGT
[ENA]
¢þ
>W08007856
ABKN01000001
Alphaproteobacteria
Afipia carboxidovorans OM5 [ABKN]
1578973
1578902
-
Thr
TGT
[ENA]
¡û
>W141261710
CCAZ010000072
Alphaproteobacteria
Afipia felis [CCAZ]
13378
13452
+
Thr
TGT
[ENA]
¡û
>WENV170564887
CZPY01000034
[CZPY] metagenome; PAHs-polluted Soil
141609
141683
+
Thr
TGT
[ENA]
¢þ
>WENV171003199
NNBT01002345
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
8102
8028
-
Thr
TGT
[ENA]
¢þ
>W09104391
AALQ01000006
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [AALQ]
190452
190378
-
Thr
TGT
[ENA]
¡û
>W09107587
ABJR01000002
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [ABJR]
172945
173019
+
Thr
TGT
[ENA]
¡û
>C191152078
CP036515
Alphaproteobacteria
Lichenihabitans psoromatis PAMC 29148 [CP036515]
3066059
3066133
+
Thr
TGT
-
¡û
>W141731207
JNIX01000005
Alphaproteobacteria
Brevundimonas bacteroides DSM 4726 [JNIX]
4212
4138
-
Thr
TGT
[ENA]
¡û
>W1910913985
NHSJ01000018
Alphaproteobacteria
Rhodoblastus sphagnicola DSM 16996 [NHSJ]
95216
95142
-
Thr
TGT
[ENA]
¡û
>W1911219149
NRSI01000004
Alphaproteobacteria
Rhodopseudomonas palustris DSM 126 [NRSI]
111330
111256
-
Thr
TGT
[ENA]
¡û
>W1911809178
QYYC01000039
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.37 [QYYC]
106552
106626
+
Thr
TGT
[ENA]
¡û
>W1810069337
PEBF01000001
Alphaproteobacteria
Caulobacter sp. FWC2 [PEBF]
1860389
1860315
-
Thr
TGT
[ENA]
¡û
>W1810679410
QKQS01000001
Alphaproteobacteria
Rhodopseudomonas palustris XCP [QKQS]
10104
10178
+
Thr
TGT
[ENA]
¡û
>W10112823
ADFI01000015
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
57822
57896
+
Thr
TGT
[ENA]
¡û
>C10110753
CP001096
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [CP001096]
4135946
4136020
+
Thr
TGT
[Ensembl]
¡û
>W11116050
ADFI01000015
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
57822
57896
+
Thr
TGT
[ENA]
¡û
>W1511353011
JROW01000116
Alphaproteobacteria
Methylobacterium sp. ZNC0032 [JROW]
36740
36814
+
Thr
TGT
[ENA]
¡û
>C121002985
CP002826
Alphaproteobacteria
Afipia carboxidovorans OM5 [CP002826]
2545812
2545886
+
Thr
TGT
-
¡û
>C161048032
CP012946
Alphaproteobacteria
Blastochloris viridis ATCC 19567 [CP012946]
1631064
1630990
-
Thr
TGT
-
¡û
>C161108110
LN907867
Alphaproteobacteria
Blastochloris viridis [LN907867]
1031036
1030962
-
Thr
TGT
[Ensembl]
¡û
>W1610648985
LJHQ01000011
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
115632
115558
-
Thr
TGT
[ENA]
¡û
>W1610660506
LJSD01000062
Alphaproteobacteria
Mesorhizobium sp. 1M-11 [LJSD]
12422
12496
+
Thr
TGT
[ENA]
¡û
>W1610731991
LMJW01000022
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
286621
286695
+
Thr
TGT
[ENA]
¡û
>W1610913817
LSJP01000251
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
8297
8223
-
Thr
TGT
[ENA]
¡û
>W1610914026
LSJU01000489
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
4183
4257
+
Thr
TGT
[ENA]
¡û
>W1610914167
LSJX01000203
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
8290
8216
-
Thr
TGT
[ENA]
¡û
>W1710556989
FOKP01000008
Alphaproteobacteria
Bosea sp. CRIB-10 DSM 18164 [FOKP]
173430
173504
+
Thr
TGT
[ENA]
¡û
>W1710578507
FPBQ01000003
Alphaproteobacteria
Bradyrhizobium arachidis [FPBQ]
583777
583851
+
Thr
TGT
[ENA]
¡û
>W1710596443
FTMO01000005
Alphaproteobacteria
Bosea sp. TND4EK4 [FTMO]
189027
189101
+
Thr
TGT
[ENA]
¡û
>W1710606283
FWXR01000006
Alphaproteobacteria
Fulvimarina manganoxydans [FWXR]
24371
24445
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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