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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.359846 (28 seq.)
>W131098542
AORV01000046
Bacillota
Ruminiclostridium cellobioparum CT1112 [AORV]
122201
122127
-
Arg
CCG
[ENA]
¡û
>W1711078529
LSMZ01000006
Bacillota
Clostridium sp. link-BC1 [LSMZ]
133639
133713
+
Arg
CCG
[ENA]
¡û
>W1711222534
LXSB01000001
Bacillota
Clostridium sp. Bc-iso-3 [LXSB]
3581535
3581609
+
Arg
CCG
[ENA]
¡û
>W1711903052
MZGX01000004
Bacillota
Ruminiclostridium hungatei [MZGX]
189649
189575
-
Arg
CCG
[ENA]
¡û
>C007131
CP000568
Bacillota
Acetivibrio thermocellus ATCC 27405 [CP000568]
3167860
3167934
+
Arg
CCG
[Ensembl]
¡û
>w020755
AAVC01000057
Bacillota
Ruminiclostridium cellulolyticum H10 [AAVC]
8154
8078
-
Arg
CCG
[ENA]
¡û
>W08011395
ABVG01000033
Bacillota
Acetivibrio thermocellus DSM 4150 [ABVG]
3472
3401
-
Arg
CCG
[ENA]
¡û
>W141233363
BAVR01000006
Bacillota
Acetivibrio straminisolvens JCM 21531 [BAVR]
30168
30242
+
Arg
CCG
[ENA]
¡û
>W141251503
CBQO010000109
Bacillota
Acetivibrio thermocellus BC1 [CBQO]
4356
4430
+
Arg
CCG
[ENA]
¡û
>WENV170008045
AMZC01000567
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
2101
2027
-
Arg
CCG
[ENA]
¢þ
>WENV170684250
LFRM01028761
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
30022
30096
+
Arg
CCG
[ENA]
¢þ
>WENV170719278
LSQX01108526
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
5804
5878
+
Arg
CCG
[ENA]
¢þ
>WENV170727191
LSQX01408114
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
12615
12689
+
Arg
CCG
[ENA]
¢þ
>W141561081
JHYD01000024
Bacillota
Ruminiclostridium cellobioparum DSM 1351 = ATCC 15832 [JHYD]
18748
18822
+
Arg
CCG
[ENA]
¡û
>W09100471
AABG04000048
Bacillota
Acetivibrio thermocellus ATCC 27405 [AABG]
8986
8912
-
Arg
CCG
[ENA]
¡û
>W09135638
ACVX01000001
Bacillota
Acetivibrio thermocellus DSM 2360 [ACVX]
149897
149823
-
Arg
CCG
[ENA]
¡û
>C09103086
CP001348
Bacillota
Ruminiclostridium cellulolyticum H10 H10; ATCC 35319 [CP001348]
3533840
3533766
-
Arg
CCG
[Ensembl]
¡û
>W1911496670
OCMV01000002
Bacillota
Acetivibrio thermocellus LQRI [OCMV]
154228
154154
-
Arg
CCG
[ENA]
¡û
>W1911572309
PDBW01000001
Bacillota
Acetivibrio thermocellus AD2 [PDBW]
298413
298487
+
Arg
CCG
[ENA]
¡û
>W1810677413
QKMR01000007
Bacillota
Ruminiclostridium sufflavum DSM 19573 [QKMR]
103892
103818
-
Arg
CCG
[ENA]
¡û
>C11106461
CP002416
Bacillota
Acetivibrio thermocellus DSM 1313 [CP002416]
298318
298392
+
Arg
CCG
[Ensembl]
¡û
>C121005059
CP003065
Bacillota
Acetivibrio clariflavus DSM 19732 [CP003065]
4061398
4061324
-
Arg
CCG
[Ensembl]
¡û
>C161060770
CP013828
Bacillota
Acetivibrio thermocellus AD2 [CP013828]
298413
298487
+
Arg
CCG
-
¡û
>C161097522
CP016502
Bacillota
Acetivibrio thermocellus DSM 2360 LQRI [CP016502]
298236
298310
+
Arg
CCG
-
¡û
>W121061318
AJGS01000065
Bacillota
Acetivibrio thermocellus AD2 [AJGS]
137885
137811
-
Arg
CCG
[ENA]
¡û
>W121061375
AJGT01000047
Bacillota
Acetivibrio thermocellus YS [AJGT]
198632
198558
-
Arg
CCG
[ENA]
¡û
>W1610605577
LFSC01000006
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
30022
30096
+
Arg
CCG
[ENA]
¡û
>W1710726864
LFSC01000006
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
30022
30096
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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