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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.359851 (111 seq.)
>W131053531
ANAD01000119
Actinomycetota
Nocardiopsis halophila DSM 44494 [ANAD]
4226
4153
-
Gly
GCC
[ENA]
¡û
>W131053558
ANAD01000205
Actinomycetota
Nocardiopsis halophila DSM 44494 [ANAD]
25966
25893
-
Gly
GCC
[ENA]
¡û
>W131053559
ANAD01000205
Actinomycetota
Nocardiopsis halophila DSM 44494 [ANAD]
25833
25760
-
Gly
GCC
[ENA]
¡û
>W131054318
ANAS01000042
Actinomycetota
Nocardiopsis baichengensis YIM 90130 [ANAS]
1266
1193
-
Gly
GCC
[ENA]
¡û
>W131054321
ANAS01000044
Actinomycetota
Nocardiopsis baichengensis YIM 90130 [ANAS]
37613
37686
+
Gly
GCC
[ENA]
¡û
>W131054322
ANAS01000044
Actinomycetota
Nocardiopsis baichengensis YIM 90130 [ANAS]
37746
37819
+
Gly
GCC
[ENA]
¡û
>W131054646
ANAX01000240
Actinomycetota
Nocardiopsis halotolerans DSM 44410 [ANAX]
12211
12138
-
Gly
GCC
[ENA]
¡û
>W131054655
ANAX01000325
Actinomycetota
Nocardiopsis halotolerans DSM 44410 [ANAX]
11374
11447
+
Gly
GCC
[ENA]
¡û
>W131054763
ANAZ01000014
Actinomycetota
Nocardiopsis valliformis DSM 45023 [ANAZ]
6917
6844
-
Gly
GCC
[ENA]
¡û
>W131054777
ANAZ01000046
Actinomycetota
Nocardiopsis valliformis DSM 45023 [ANAZ]
39670
39743
+
Gly
GCC
[ENA]
¡û
>W131054783
ANAZ01000058
Actinomycetota
Nocardiopsis valliformis DSM 45023 [ANAZ]
9834
9909
+
Gly
GCC
[ENA]
¡û
>W131054839
ANBB01000001
Actinomycetota
Nocardiopsis potens DSM 45234 [ANBB]
29548
29475
-
Gly
GCC
[ENA]
¡û
>W131054840
ANBB01000001
Actinomycetota
Nocardiopsis potens DSM 45234 [ANBB]
29415
29342
-
Gly
GCC
[ENA]
¡û
>W131054863
ANBB01000044
Actinomycetota
Nocardiopsis potens DSM 45234 [ANBB]
31513
31586
+
Gly
GCC
[ENA]
¡û
>W131055104
ANBF01000169
Actinomycetota
Nocardiopsis salina YIM 90010 [ANBF]
100564
100489
-
Gly
GCC
[ENA]
¡û
>W131055105
ANBF01000169
Actinomycetota
Nocardiopsis salina YIM 90010 [ANBF]
100414
100339
-
Gly
GCC
[ENA]
¡û
>W131055106
ANBF01000169
Actinomycetota
Nocardiopsis salina YIM 90010 [ANBF]
100264
100189
-
Gly
GCC
[ENA]
¡û
>W131055107
ANBF01000169
Actinomycetota
Nocardiopsis salina YIM 90010 [ANBF]
100114
100039
-
Gly
GCC
[ENA]
¡û
>W131055130
ANBG01000061
Actinomycetota
Nocardiopsis gilva YIM 90087 [ANBG]
17220
17293
+
Gly
GCC
[ENA]
¡û
>W131055131
ANBG01000061
Actinomycetota
Nocardiopsis gilva YIM 90087 [ANBG]
17333
17406
+
Gly
GCC
[ENA]
¡û
>W131055135
ANBG01000064
Actinomycetota
Nocardiopsis gilva YIM 90087 [ANBG]
15602
15675
+
Gly
GCC
[ENA]
¡û
>W131230051
AUHH01000010
Actinomycetota
Granulicoccus phenolivorans DSM 17626 [AUHH]
143398
143471
+
Gly
GCC
[ENA]
¡û
>W131230074
AUHH01000051
Actinomycetota
Granulicoccus phenolivorans DSM 17626 [AUHH]
4
77
+
Gly
GCC
[ENA]
¡û
>WENV180392975
OBPP01036585
[OBPP] marine metagenome; ENVO:00002042
351
426
+
Gly
GCC
[ENA]
¢þ
>WENV183682074
ORMF010393590
[ORMF] groundwater metagenome; groundwater
850
775
-
Gly
GCC
[ENA]
¢þ
>WENV170129816
CENQ01132930
[CENQ] marine metagenome genome assembly TARA_031_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
449
376
-
Gly
GCC
[ENA]
¢þ
>WENV170198816
CEPL01044827
[CEPL] marine metagenome genome assembly TARA_045_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
978
905
-
Gly
GCC
[ENA]
¢þ
>WENV170473952
CEVH01086682
[CEVH] marine metagenome genome assembly TARA_141_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1752
1679
-
Gly
GCC
[ENA]
¢þ
>WENV170552458
CXWK01000096
[CXWK] wastewater metagenome; activated sludge
37093
37018
-
Gly
GCC
[ENA]
¢þ
>WENV170648969
JRHI01004308
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
6701
6776
+
Gly
GCC
[ENA]
¢þ
>WENV170662703
JXWW01143487
[JXWW] soil metagenome; rice field; organic GM Plot
252
179
-
Gly
GCC
[ENA]
¢þ
>WENV170718341
LSQX01072008
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
4639
4712
+
Gly
GCC
[ENA]
¢þ
>WENV170813413
MDSW01199613
[MDSW] marine metagenome; seawater
6000
5927
-
Gly
GCC
[ENA]
¢þ
>WENV170914949
MDTE01156010
[MDTE] marine metagenome; seawater
5
78
+
Gly
GCC
[ENA]
¢þ
>C181064854
CP022434
Actinomycetota
Nocardiopsis dassonvillei HZNU_N_1 [CP022434]
4759715
4759788
+
Gly
GCC
-
¡û
>C181064855
CP022434
Actinomycetota
Nocardiopsis dassonvillei HZNU_N_1 [CP022434]
4759858
4759931
+
Gly
GCC
-
¡û
>C181064881
CP022434
Actinomycetota
Nocardiopsis dassonvillei HZNU_N_1 [CP022434]
2175406
2175333
-
Gly
GCC
-
¡û
>C191174144
CP040020
Actinomycetota
Brevibacterium sp. CS2 [CP040020]
2667039
2666966
-
Gly
GCC
-
¡û
>W09109577
ABUI01000032
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [ABUI]
54620
54693
+
Gly
GCC
[ENA]
¡û
>W09109582
ABUI01000051
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [ABUI]
18025
17950
-
Gly
GCC
[ENA]
¡û
>W09109583
ABUI01000051
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [ABUI]
17882
17809
-
Gly
GCC
[ENA]
¡û
>W141820058
JQMQ01000005
Actinomycetota
Phaeacidiphilus oryzae TH49 [JQMQ]
979548
979621
+
Gly
GCC
[ENA]
¡û
>W141820068
JQMQ01000005
Actinomycetota
Phaeacidiphilus oryzae TH49 [JQMQ]
3403527
3403602
+
Gly
GCC
[ENA]
¡û
>W1910498616
FXWZ01000002
Actinomycetota
Brevibacterium ihuae CV3 [FXWZ]
238817
238890
+
Gly
GCC
[ENA]
¡û
>W1911076329
NMVK01000016
Actinomycetota
Enemella evansiae NML 150272 [NMVK]
142774
142847
+
Gly
GCC
[ENA]
¡û
>W1911076355
NMVL01000011
Actinomycetota
Enemella evansiae NML 140250 [NMVL]
627573
627500
-
Gly
GCC
[ENA]
¡û
>W1911709295
QPKK01000045
Actinomycetota
Desertihabitans aurantiacus CPCC 204711 [QPKK]
7425
7352
-
Gly
GCC
[ENA]
¡û
>W1911709909
QPNC01000006
Actinomycetota
Nocardiopsis sp. FIRDI 009 [QPNC]
255922
255995
+
Gly
GCC
[ENA]
¡û
>W1911709910
QPNC01000006
Actinomycetota
Nocardiopsis sp. FIRDI 009 [QPNC]
256057
256130
+
Gly
GCC
[ENA]
¡û
>W1911813315
QZEY01000002
Actinomycetota
Bailinhaonella thermotolerans YIM 75507 [QZEY]
117004
117077
+
Gly
GCC
[ENA]
¡û
>W1911813325
QZEY01000002
Actinomycetota
Bailinhaonella thermotolerans YIM 75507 [QZEY]
158742
158669
-
Gly
GCC
[ENA]
¡û
>W1911813340
QZEY01000004
Actinomycetota
Bailinhaonella thermotolerans YIM 75507 [QZEY]
107072
107145
+
Gly
GCC
[ENA]
¡û
>W1810046829
NYMS01000010
Actinomycetota
Glycomyces fuscus TRM 49117 [NYMS]
125838
125765
-
Gly
GCC
[ENA]
¡û
>W1810046876
NYMS01000062
Actinomycetota
Glycomyces fuscus TRM 49117 [NYMS]
159064
158991
-
Gly
GCC
[ENA]
¡û
>W1810046877
NYMS01000062
Actinomycetota
Glycomyces fuscus TRM 49117 [NYMS]
158921
158848
-
Gly
GCC
[ENA]
¡û
>W1810570580
QEIO01000084
Actinomycetota
Marinitenerispora sediminis TPS16 [QEIO]
21756
21829
+
Gly
GCC
[ENA]
¡û
>W1810570581
QEIO01000084
Actinomycetota
Marinitenerispora sediminis TPS16 [QEIO]
21866
21939
+
Gly
GCC
[ENA]
¡û
>W1810570594
QEIO01000127
Actinomycetota
Marinitenerispora sediminis TPS16 [QEIO]
13422
13349
-
Gly
GCC
[ENA]
¡û
>W1810735336
QOIL01000020
Actinomycetota
Sphaerisporangium album CCTCC AA 208026 [QOIL]
141099
141172
+
Gly
GCC
[ENA]
¡û
>W1810735346
QOIL01000025
Actinomycetota
Sphaerisporangium album CCTCC AA 208026 [QOIL]
137271
137198
-
Gly
GCC
[ENA]
¡û
>W1810735348
QOIL01000025
Actinomycetota
Sphaerisporangium album CCTCC AA 208026 [QOIL]
22350
22277
-
Gly
GCC
[ENA]
¡û
>W1810735350
QOIL01000025
Actinomycetota
Sphaerisporangium album CCTCC AA 208026 [QOIL]
22115
22042
-
Gly
GCC
[ENA]
¡û
>W1810744364
QOUI01000001
Actinomycetota
Desertihabitans brevis 16Sb5-5 [QOUI]
525980
526053
+
Gly
GCC
[ENA]
¡û
>W10114033
ADGT01000008
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
57241
57316
+
Gly
GCC
[ENA]
¡û
>C10109679
CP002040
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [CP002040, CP002041]
3909429
3909504
+
Gly
GCC
[Ensembl]
¡û
>C10109680
CP002040
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [CP002040, CP002041]
3909572
3909645
+
Gly
GCC
[Ensembl]
¡û
>C10109707
CP002040
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [CP002040, CP002041]
1364343
1364270
-
Gly
GCC
[Ensembl]
¡û
>C11109364
CP002801
Actinomycetota
Candidatus Protofrankia datiscae Dg1 [CP002801]
3046192
3046267
+
Gly
GCC
[Ensembl]
¡û
>W11117369
ADGT01000008
Actinobacteria
Frankia symbiont of Datisca glomerata [ADGT] of Datisca glomerata [ADGT]
57241
57316
+
Gly
GCC
[ENA]
¡û
>W1511479817
JWIO01000014
Actinomycetota
Protofrankia coriariae BMG5.1 [JWIO]
43968
44043
+
Gly
GCC
[ENA]
¡û
>W1511568507
LAJC01000014
Actinomycetota
Allosalinactinospora lopnorensis CA15-2 [LAJC]
71889
71816
-
Gly
GCC
[ENA]
¡û
>W1511568508
LAJC01000014
Actinomycetota
Allosalinactinospora lopnorensis CA15-2 [LAJC]
71777
71704
-
Gly
GCC
[ENA]
¡û
>W1511568535
LAJC01000075
Actinomycetota
Allosalinactinospora lopnorensis CA15-2 [LAJC]
24523
24596
+
Gly
GCC
[ENA]
¡û
>W1511573834
LANG01000011
Actinomycetota
Pseudofrankia sp. DC12 DC12 [LANG]
777360
777433
+
Gly
GCC
[ENA]
¡û
>W1511584533
LAVM01000007
Actinomycetota
Nocardiopsis sp. SBT366 [LAVM]
38317
38392
+
Gly
GCC
[ENA]
¡û
>W1511584534
LAVM01000007
Actinomycetota
Nocardiopsis sp. SBT366 [LAVM]
38461
38534
+
Gly
GCC
[ENA]
¡û
>W1511656808
LEKI01000044
Actinomycetota
Nocardiopsis sp. RV163 [LEKI]
10099
10024
-
Gly
GCC
[ENA]
¡û
>W1511656809
LEKI01000044
Actinomycetota
Nocardiopsis sp. RV163 [LEKI]
9956
9883
-
Gly
GCC
[ENA]
¡û
>W1511656821
LEKI01000098
Actinomycetota
Nocardiopsis sp. RV163 [LEKI]
2540
2467
-
Gly
GCC
[ENA]
¡û
>WENV056252
AACY023252228
Marine microbial communities from Global Ocean Sampling (GOS)
963
888
-
Gly
GCC
[ENA]
>WENV058224
AACY023321797
Marine microbial communities from Global Ocean Sampling (GOS)
411
486
+
Gly
GCC
[ENA]
>WENV060954
AACY023417281
Marine microbial communities from Global Ocean Sampling (GOS)
205
130
-
Gly
GCC
[ENA]
>W1610068511
BCRK01000011
Actinomycetota
Nocardiopsis trehalosi NBRC 14201 [BCRK]
19678
19751
+
Gly
GCC
[ENA]
¡û
>W1610068512
BCRK01000011
Actinomycetota
Nocardiopsis trehalosi NBRC 14201 [BCRK]
19789
19862
+
Gly
GCC
[ENA]
¡û
>W1610068546
BCRK01000109
Actinomycetota
Nocardiopsis trehalosi NBRC 14201 [BCRK]
14021
13948
-
Gly
GCC
[ENA]
¡û
>W1610068894
BCRR01000010
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
141379
141304
-
Gly
GCC
[ENA]
¡û
>W1610068895
BCRR01000010
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
141236
141163
-
Gly
GCC
[ENA]
¡û
>W1610068932
BCRR01000113
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
9293
9366
+
Gly
GCC
[ENA]
¡û
>W1610069220
BCSH01000047
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
60771
60698
-
Gly
GCC
[ENA]
¡û
>W1610069221
BCSH01000047
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
60625
60552
-
Gly
GCC
[ENA]
¡û
>W1610069223
BCSH01000047
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
28946
28873
-
Gly
GCC
[ENA]
¡û
>W1610507948
FLUV01001680
Actinomycetota
Candidatus Protofrankia californiensis sp. [FLUV]
1107
1182
+
Gly
GCC
[ENA]
¡û
>W1610597768
LFFI01000072
Actinomycetota
Actinobacteria bacterium casp-actino9 [LFFI]
311
386
+
Gly
GCC
[ENA]
¡û
>W1710065884
BCRK01000011
Actinomycetota
Nocardiopsis trehalosi NBRC 14201 [BCRK]
19678
19751
+
Gly
GCC
[ENA]
¡û
>W1710065885
BCRK01000011
Actinomycetota
Nocardiopsis trehalosi NBRC 14201 [BCRK]
19789
19862
+
Gly
GCC
[ENA]
¡û
>W1710065919
BCRK01000109
Actinomycetota
Nocardiopsis trehalosi NBRC 14201 [BCRK]
14021
13948
-
Gly
GCC
[ENA]
¡û
>W1710066267
BCRR01000010
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
141379
141304
-
Gly
GCC
[ENA]
¡û
>W1710066268
BCRR01000010
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
141236
141163
-
Gly
GCC
[ENA]
¡û
>W1710066305
BCRR01000113
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
9293
9366
+
Gly
GCC
[ENA]
¡û
>W1710066593
BCSH01000047
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
60771
60698
-
Gly
GCC
[ENA]
¡û
>W1710066594
BCSH01000047
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
60625
60552
-
Gly
GCC
[ENA]
¡û
>W1710066596
BCSH01000047
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
28946
28873
-
Gly
GCC
[ENA]
¡û
>W1710516373
FNCN01000027
Actinomycetota
Sinosporangium album [FNCN]
5349
5274
-
Gly
GCC
[ENA]
¡û
>W1710516382
FNCN01000036
Actinomycetota
Sinosporangium album [FNCN]
704
631
-
Gly
GCC
[ENA]
¡û
>W1710516384
FNCN01000036
Actinomycetota
Sinosporangium album [FNCN]
443
368
-
Gly
GCC
[ENA]
¡û
>W1710544077
FOAO01000012
Actinomycetota
Blastococcus sp. DSM 46786 [FOAO]
129939
130012
+
Gly
GCC
[ENA]
¡û
>W1710567606
FOSW01000007
Actinomycetota
Geodermatophilus ruber [FOSW]
179910
179983
+
Gly
GCC
[ENA]
¡û
>W1710588502
FQZK01000010
Actinomycetota
Nocardiopsis flavescens [FQZK]
23262
23337
+
Gly
GCC
[ENA]
¡û
>W1710588503
FQZK01000010
Actinomycetota
Nocardiopsis flavescens [FQZK]
23407
23480
+
Gly
GCC
[ENA]
¡û
>W1710588506
FQZK01000010
Actinomycetota
Nocardiopsis flavescens [FQZK]
67773
67846
+
Gly
GCC
[ENA]
¡û
>W1710719015
LFFI01000072
Actinomycetota
Actinobacteria bacterium casp-actino9 [LFFI]
311
386
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK