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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.360017 (14 seq.)
>W1711128596
LUSO01000012
Bacillota
Clostridium baratii [LUSO]
286963
286889
-
Glu
CTC
[ENA]
¡û
>W1711462061
MJHL01000010
Bacillota
Clostridium baratii [MJHL]
270631
270705
+
Glu
CTC
[ENA]
¡û
>W1711462133
MJHM01000005
Bacillota
Clostridium baratii [MJHM]
472278
472204
-
Glu
CTC
[ENA]
¡û
>W1711462231
MJHN01000019
Bacillota
Clostridium baratii [MJHN]
907311
907237
-
Glu
CTC
[ENA]
¡û
>C171030576
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
577652
577726
+
Glu
CTC
-
¡û
>WENV182952142
OKVV01005385
[OKVV] human gut metagenome; human gut
239
313
+
Glu
CTC
[ENA]
¢þ
>C151014233
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
2548567
2548493
-
Glu
CTC
[Ensembl]
¡û
>W1511551768
JZTY01000012
Bacillota
Clostridium baratii 771-14 [JZTY]
30120
30194
+
Glu
CTC
[ENA]
¡û
>W1610103115
CZAV01000001
Bacillota
Clostridium baratii [CZAV]
824000
824074
+
Glu
CTC
[ENA]
¡û
>W1610104203
CZBO01000001
Bacillota
Clostridium baratii [CZBO]
796967
797041
+
Glu
CTC
[ENA]
¡û
>W1610616855
LGRR01000022
Bacillota
Clostridium baratii [LGRR]
145040
145114
+
Glu
CTC
[ENA]
¡û
>W1710105870
CZAV01000001
Bacillota
Clostridium baratii [CZAV]
824000
824074
+
Glu
CTC
[ENA]
¡û
>W1710106907
CZBO01000001
Bacillota
Clostridium baratii [CZBO]
796967
797041
+
Glu
CTC
[ENA]
¡û
>W1710742194
LGRR01000022
Bacillota
Clostridium baratii [LGRR]
145040
145114
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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