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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.360328 (113 seq.)
>W1710926118
LODS01000006
Gammaproteobacteria
Pasteurella multocida subsp. multocida [LODS]
32955
32880
-
Phe
GAA
[ENA]
¡û
>W1710998917
LQCY01000034
Gammaproteobacteria
Mannheimia haemolytica [LQCY]
67279
67354
+
Phe
GAA
[ENA]
¡û
>W1710998919
LQCY01000034
Gammaproteobacteria
Mannheimia haemolytica [LQCY]
67606
67681
+
Phe
GAA
[ENA]
¡û
>W1710999324
LQDI01000039
Gammaproteobacteria
Pasteurella multocida [LQDI]
32934
32859
-
Phe
GAA
[ENA]
¡û
>W1711001095
LQEZ01000074
Gammaproteobacteria
Mannheimia haemolytica [LQEZ]
67279
67354
+
Phe
GAA
[ENA]
¡û
>W1711001097
LQEZ01000074
Gammaproteobacteria
Mannheimia haemolytica [LQEZ]
67606
67681
+
Phe
GAA
[ENA]
¡û
>W1711001792
LQFP01000113
Gammaproteobacteria
Mannheimia haemolytica [LQFP]
13991
13916
-
Phe
GAA
[ENA]
¡û
>W1711001794
LQFP01000113
Gammaproteobacteria
Mannheimia haemolytica [LQFP]
13664
13589
-
Phe
GAA
[ENA]
¡û
>W1711002927
LQGQ01000087
Gammaproteobacteria
Mannheimia haemolytica [LQGQ]
54108
54183
+
Phe
GAA
[ENA]
¡û
>W1711002929
LQGQ01000087
Gammaproteobacteria
Mannheimia haemolytica [LQGQ]
54435
54510
+
Phe
GAA
[ENA]
¡û
>W1711359950
MDJC01000018
Gammaproteobacteria
Haemophilus quentini [MDJC]
25212
25287
+
Phe
GAA
[ENA]
¡û
>W1711466060
MJMB01000001
Gammaproteobacteria
Rodentibacter pneumotropicus [MJMB]
9955
9880
-
Phe
GAA
[ENA]
¡û
>W1711509887
MLAC01000055
Gammaproteobacteria
Rodentibacter heylii [MLAC]
36195
36270
+
Phe
GAA
[ENA]
¡û
>W1711510078
MLAG01000041
Gammaproteobacteria
Rodentibacter ratti [MLAG]
6178
6103
-
Phe
GAA
[ENA]
¡û
>W1711515211
MLHI01000136
Gammaproteobacteria
Rodentibacter rarus [MLHI]
3850
3775
-
Phe
GAA
[ENA]
¡û
>W1711515438
MLHN01000011
Gammaproteobacteria
Rodentibacter genomosp. 1 [MLHN]
68806
68731
-
Phe
GAA
[ENA]
¡û
>W1711571785
MNAP01000003
Gammaproteobacteria
Glaesserella parasuis [MNAP]
62612
62687
+
Phe
GAA
[ENA]
¡û
>W1711711835
MTBH01000032
Gammaproteobacteria
Haemophilus influenzae [MTBH]
859
934
+
Phe
GAA
[ENA]
¡û
>W1711714656
MTEA01000006
Gammaproteobacteria
Pasteurella multocida subsp. septica [MTEA]
77356
77431
+
Phe
GAA
[ENA]
¡û
>C171084344
CP018806
Gammaproteobacteria
Histophilus somni USDA-ARS-USMARC-63370 [CP018806]
20653
20728
+
Phe
GAA
-
¡û
>C171104097
CP020085
Gammaproteobacteria
Glaesserella parasuis CL120103 [CP020085]
655094
655169
+
Phe
GAA
-
¡û
>W131181382
ARNY01000006
Gammaproteobacteria
Pasteurella multocida P1933 [ARNY]
49963
50038
+
Phe
GAA
[ENA]
¡û
>C017245
AE004439
Gammaproteobacteria
Pasteurella multocida subsp. multocida str. Pm70 [AE004439]
1513793
1513868
+
Phe
GAA
[Ensembl]
¡û
>W141021607
AJMF01000275
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype b str. SCC4092 [AJMF]
3998
4073
+
Phe
GAA
[ENA]
¡û
>WENV180416437
OBVG01001998
[OBVG] human gut metagenome; faeces
2706
2631
-
Phe
GAA
[ENA]
¢þ
>WENV180433225
OBWJ01000804
[OBWJ] human gut metagenome; faeces
10275
10200
-
Phe
GAA
[ENA]
¢þ
>WENV180445432
OBXA01005159
[OBXA] human gut metagenome; faeces
2688
2613
-
Phe
GAA
[ENA]
¢þ
>WENV180456408
OBXQ01003610
[OBXQ] human gut metagenome; faeces
80
5
-
Phe
GAA
[ENA]
¢þ
>W141051669
ANKT01000028
Gammaproteobacteria
Glaesserella parasuis str. Nagasaki [ANKT]
24249
24174
-
Phe
GAA
[ENA]
¡û
>WENV180550392
OCJA01005462
[OCJA] human oral metagenome; human oral
362
437
+
Phe
GAA
[ENA]
¢þ
>WENV180722641
ODGM01005857
[ODGM] human metagenome; G_DNA_Palatine Tonsils
1567
1492
-
Phe
GAA
[ENA]
¢þ
>WENV180722866
ODGM01038301
[ODGM] human metagenome; G_DNA_Palatine Tonsils
92
167
+
Phe
GAA
[ENA]
¢þ
>WENV180723020
ODGM01125259
[ODGM] human metagenome; G_DNA_Palatine Tonsils
132
57
-
Phe
GAA
[ENA]
¢þ
>WENV180764509
ODIB01000020
[ODIB] human metagenome; G_DNA_Supragingival plaque
60410
60485
+
Phe
GAA
[ENA]
¢þ
>WENV180808255
ODJJ01007697
[ODJJ] human metagenome; G_DNA_Buccal mucosa
36
111
+
Phe
GAA
[ENA]
¢þ
>WENV180810722
ODJM01000272
[ODJM] human metagenome; G_DNA_Buccal mucosa
15197
15122
-
Phe
GAA
[ENA]
¢þ
>WENV180818486
ODJQ01028880
[ODJQ] human metagenome; G_DNA_Stool
1158
1233
+
Phe
GAA
[ENA]
¢þ
>WENV180873068
ODLP01000913
[ODLP] human metagenome; G_DNA_Tongue dorsum
2094
2169
+
Phe
GAA
[ENA]
¢þ
>WENV180913225
ODST01000050
[ODST] human metagenome; G_DNA_Attached/Keratinized gingiva
21810
21735
-
Phe
GAA
[ENA]
¢þ
>WENV180943269
ODUC01000089
[ODUC] human metagenome; G_DNA_Supragingival plaque
39985
39910
-
Phe
GAA
[ENA]
¢þ
>WENV180943558
ODUC01000962
[ODUC] human metagenome; G_DNA_Supragingival plaque
13207
13132
-
Phe
GAA
[ENA]
¢þ
>WENV180944206
ODUC01010422
[ODUC] human metagenome; G_DNA_Supragingival plaque
3123
3198
+
Phe
GAA
[ENA]
¢þ
>WENV180968091
ODUT01009211
[ODUT] human metagenome; G_DNA_Tongue dorsum
1758
1683
-
Phe
GAA
[ENA]
¢þ
>WENV180990868
ODVN01007164
[ODVN] human metagenome; G_DNA_Tongue dorsum
402
477
+
Phe
GAA
[ENA]
¢þ
>WENV181012232
ODWJ01076753
[ODWJ] human metagenome; G_DNA_Buccal mucosa
1
76
+
Phe
GAA
[ENA]
¢þ
>WENV181017684
ODWS01000458
[ODWS] human metagenome; G_DNA_Buccal mucosa
2627
2702
+
Phe
GAA
[ENA]
¢þ
>WENV181018658
ODWU01000014
[ODWU] human metagenome; G_DNA_Supragingival plaque
80772
80847
+
Phe
GAA
[ENA]
¢þ
>WENV181095711
OEBY01016776
[OEBY] human metagenome; G_DNA_Tongue dorsum
1578
1653
+
Phe
GAA
[ENA]
¢þ
>WENV181137039
OEGJ01000061
[OEGJ] human metagenome; G_DNA_Supragingival plaque
12158
12083
-
Phe
GAA
[ENA]
¢þ
>WENV181157048
OEIG01000194
[OEIG] human metagenome; G_DNA_Hard palate
21785
21710
-
Phe
GAA
[ENA]
¢þ
>WENV181157348
OEIG01002556
[OEIG] human metagenome; G_DNA_Hard palate
5691
5766
+
Phe
GAA
[ENA]
¢þ
>WENV181157869
OEIG01041214
[OEIG] human metagenome; G_DNA_Hard palate
176
251
+
Phe
GAA
[ENA]
¢þ
>WENV181429317
OGCX01001313
[OGCX] metagenome; Human gut stool
2181
2256
+
Phe
GAA
[ENA]
¢þ
>WENV181466133
OGEQ01002099
[OGEQ] metagenome; Human gut stool
11238
11313
+
Phe
GAA
[ENA]
¢þ
>WENV181469573
OGET01009622
[OGET] metagenome; Human gut stool
784
709
-
Phe
GAA
[ENA]
¢þ
>WENV181491226
OGFX01007354
[OGFX] metagenome; Human gut stool
980
1055
+
Phe
GAA
[ENA]
¢þ
>WENV181648015
OGNQ01002361
[OGNQ] metagenome; Human gut stool
1772
1697
-
Phe
GAA
[ENA]
¢þ
>WENV182489460
OISC01011041
[OISC] human gut metagenome; human gut
1045
970
-
Phe
GAA
[ENA]
¢þ
>W141266548
CCMQ01000008
Gammaproteobacteria
Necropsobacter rosorum [CCMQ]
188142
188067
-
Phe
GAA
[ENA]
¡û
>W1910378517
FULE01000050
Gammaproteobacteria
Vibrio ruber DSM 16370 CECT 7878 [FULE]
57423
57498
+
Phe
GAA
[ENA]
¡û
>W1910859441
NBYY01000034
Gammaproteobacteria
Candidatus Enterovibrio escacola escacola MJ02 [NBYY]
185531
185606
+
Phe
GAA
[ENA]
¡û
>W1910875363
NDZN01000038
Gammaproteobacteria
Haemophilus influenzae 124P3H1 [NDZN]
12495
12570
+
Phe
GAA
[ENA]
¡û
>W1910876070
NEAB01000060
Gammaproteobacteria
Haemophilus influenzae 138P39H1 [NEAB]
12547
12622
+
Phe
GAA
[ENA]
¡û
>W1910876801
NEAQ01000015
Gammaproteobacteria
Haemophilus influenzae 27P10H2 [NEAQ]
288899
288824
-
Phe
GAA
[ENA]
¡û
>W1910879686
NECU01000032
Gammaproteobacteria
Haemophilus influenzae 84P8H1 [NECU]
7046
7121
+
Phe
GAA
[ENA]
¡û
>W1910879752
NECV01000052
Gammaproteobacteria
Haemophilus influenzae 87P128H2 [NECV]
45931
46006
+
Phe
GAA
[ENA]
¡û
>W1911410166
NWTL01000007
Gammaproteobacteria
Pasteurella multocida SH02 [NWTL]
83902
83977
+
Phe
GAA
[ENA]
¡û
>W1911775531
QXNF01000020
Gammaproteobacteria
Rodentibacter pneumotropicus FD1189 [QXNF]
15801
15876
+
Phe
GAA
[ENA]
¡û
>W1810015439
BGMT01000011
Gammaproteobacteria
Haemophilus influenzae 15 [BGMT]
107070
106995
-
Phe
GAA
[ENA]
¡û
>W1810015689
BGMY01000014
Gammaproteobacteria
Haemophilus influenzae 20 [BGMY]
46635
46710
+
Phe
GAA
[ENA]
¡û
>W1810273833
PSQI01000012
Gammaproteobacteria
Pasteurella multocida PY81579 [PSQI]
43383
43308
-
Phe
GAA
[ENA]
¡û
>W1810578418
QEPR01000003
Gammaproteobacteria
Haemophilus parainfluenzae C2005004058 [QEPR]
174818
174743
-
Phe
GAA
[ENA]
¡û
>W1810578641
QEPV01000004
Gammaproteobacteria
Aggregatibacter aphrophilus C2008001229 [QEPV]
110811
110886
+
Phe
GAA
[ENA]
¡û
>W1810579152
QEQF01000006
Gammaproteobacteria
Haemophilus paraphrohaemolyticus C2014016342 [QEQF]
24157
24082
-
Phe
GAA
[ENA]
¡û
>W1810764328
QQBY01000003
Gammaproteobacteria
Haemophilus influenzae M10910 [QQBY]
63521
63596
+
Phe
GAA
[ENA]
¡û
>W1810769919
QQGD01000001
Gammaproteobacteria
Haemophilus haemolyticus M19099 [QQGD]
9872
9947
+
Phe
GAA
[ENA]
¡û
>W1810770854
QQGV01000002
Gammaproteobacteria
Haemophilus haemolyticus M26156 [QQGV]
349695
349620
-
Phe
GAA
[ENA]
¡û
>W1810771012
QQGY01000007
Gammaproteobacteria
Haemophilus haemolyticus M19079 [QQGY]
100797
100722
-
Phe
GAA
[ENA]
¡û
>W1810773769
QQJA01000001
Gammaproteobacteria
Haemophilus influenzae M18770 [QQJA]
479509
479434
-
Phe
GAA
[ENA]
¡û
>W1810774050
QQJF01000003
Gammaproteobacteria
Haemophilus haemolyticus M19071 [QQJF]
344611
344536
-
Phe
GAA
[ENA]
¡û
>W1810908953
QVJC01000002
Gammaproteobacteria
Haemophilus influenzae P677-2580 [QVJC]
46844
46919
+
Phe
GAA
[ENA]
¡û
>W1810909162
QVJG01000004
Gammaproteobacteria
Haemophilus influenzae P671-7552 [QVJG]
47558
47633
+
Phe
GAA
[ENA]
¡û
>W1810909360
QVJK01000001
Gammaproteobacteria
Haemophilus influenzae P666-8053 [QVJK]
7175
7250
+
Phe
GAA
[ENA]
¡û
>W10116780
ADOG01000037
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 6 str. Femo [ADOG]
66634
66709
+
Phe
GAA
[ENA]
¡û
>W10116782
ADOG01000037
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 6 str. Femo [ADOG]
66923
66998
+
Phe
GAA
[ENA]
¡û
>C11110311
FQ670178
Gammaproteobacteria
Haemophilus influenzae F3031 [FQ670178]
1451822
1451747
-
Phe
GAA
[Ensembl]
¡û
>W11121633
ADOG01000037
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 6 str. Femo [ADOG]
66634
66709
+
Phe
GAA
[ENA]
¡û
>W11121635
ADOG01000037
Gammaproteobacteria
Actinobacillus pleuropneumoniae serovar 6 str. Femo [ADOG]
66923
66998
+
Phe
GAA
[ENA]
¡û
>W1511448532
JUZY01000005
Gammaproteobacteria
Haemophilus influenzae 615_HINF [JUZY]
67866
67791
-
Phe
GAA
[ENA]
¡û
>W1511472061
JVYT01000034
Gammaproteobacteria
Haemophilus parainfluenzae 1209_HPAR [JVYT]
140
65
-
Phe
GAA
[ENA]
¡û
>W1511476279
JWEL01000003
Gammaproteobacteria
Haemophilus influenzae 1059_HINF [JWEL]
63022
62947
-
Phe
GAA
[ENA]
¡û
>W1511480353
JWIZ01000072
Gammaproteobacteria
Muribacter muris Ackerman80-443D [JWIZ]
7674
7749
+
Phe
GAA
[ENA]
¡û
>W1511565058
LAEN01000065
Gammaproteobacteria
Avibacterium paragallinarum CL [LAEN]
19507
19582
+
Phe
GAA
[ENA]
¡û
>W1511678436
LFDL01000001
Gammaproteobacteria
Haemophilus influenzae HI1426 [LFDL]
53276
53351
+
Phe
GAA
[ENA]
¡û
>W1511679804
LFFR01000014
Gammaproteobacteria
Haemophilus influenzae HI2114 [LFFR]
92111
92036
-
Phe
GAA
[ENA]
¡û
>W11171405
AFQN01000014
Gammaproteobacteria
Haemophilus haemolyticus M19107 [AFQN]
9525
9600
+
Phe
GAA
[ENA]
¡û
>W11171524
AFQP01000010
Gammaproteobacteria
Haemophilus haemolyticus M21127 [AFQP]
309935
309860
-
Phe
GAA
[ENA]
¡û
>C161032432
CP011223
Gammaproteobacteria
[Haemophilus] ducreyi 6644 [CP011223]
1642558
1642483
-
Phe
GAA
-
¡û
>C161032485
CP011224
Gammaproteobacteria
[Haemophilus] ducreyi HD183 [CP011224]
1618302
1618227
-
Phe
GAA
-
¡û
>C161087837
CP015424
Gammaproteobacteria
[Haemophilus] ducreyi VAN1 [CP015424]
1318645
1318570
-
Phe
GAA
-
¡û
>W1610040037
AZTP01000069
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype e str. SC936 [AZTP]
25454
25529
+
Phe
GAA
[ENA]
¡û
>W1610295087
FFIP01000001
Gammaproteobacteria
Haemophilus influenzae [FFIP]
47988
48063
+
Phe
GAA
[ENA]
¡û
>C131008794
CP003875
Gammaproteobacteria
Actinobacillus suis H91-0380 [CP003875]
2237351
2237426
+
Phe
GAA
[Ensembl]
¡û
>C131008796
CP003875
Gammaproteobacteria
Actinobacillus suis H91-0380 [CP003875]
2237647
2237722
+
Phe
GAA
[Ensembl]
¡û
>C131017640
CP006574
Gammaproteobacteria
Mannheimia haemolytica D174 [CP006574]
1694816
1694891
+
Phe
GAA
[Ensembl]
¡û
>C131017642
CP006574
Gammaproteobacteria
Mannheimia haemolytica D174 [CP006574]
1695143
1695218
+
Phe
GAA
[Ensembl]
¡û
>W1610609682
LFXZ01000004
Gammaproteobacteria
Mannheimia haemolytica [LFXZ]
60336
60411
+
Phe
GAA
[ENA]
¡û
>W1610621863
LHSO01000003
Gammaproteobacteria
Haemophilus influenzae [LHSO]
59507
59582
+
Phe
GAA
[ENA]
¡û
>W1610783723
LODS01000006
Gammaproteobacteria
Pasteurella multocida subsp. multocida [LODS]
32955
32880
-
Phe
GAA
[ENA]
¡û
>W1710037182
AZTP01000069
Gammaproteobacteria
Aggregatibacter actinomycetemcomitans serotype e str. SC936 [AZTP]
25454
25529
+
Phe
GAA
[ENA]
¡û
>W1710295721
FFIP01000001
Gammaproteobacteria
Haemophilus influenzae [FFIP]
47988
48063
+
Phe
GAA
[ENA]
¡û
>W1710730969
LFXZ01000004
Gammaproteobacteria
Mannheimia haemolytica [LFXZ]
60336
60411
+
Phe
GAA
[ENA]
¡û
>W1710752790
LHSO01000003
Gammaproteobacteria
Haemophilus influenzae [LHSO]
59507
59582
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK