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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.360353 (68 seq.)
>W131238670
BAIB02000021
Bacillota
Clostridiales bacterium VE202-14 [BAIB]
89446
89519
+
Lys
CTT
[ENA]
¡û
>WENV180134805
OATK01001709
[OATK] human gut metagenome; faeces
5016
4943
-
Lys
CTT
[ENA]
¢þ
>WENV180137235
OATO01002237
[OATO] human gut metagenome; faeces
1480
1553
+
Lys
CTT
[ENA]
¢þ
>WENV180139807
OATT01000977
[OATT] human gut metagenome; faeces
12409
12484
+
Lys
CTT
[ENA]
¢þ
>WENV180174230
OAWA01008630
[OAWA] human gut metagenome; faeces
259
186
-
Lys
CTT
[ENA]
¢þ
>WENV180176504
OAWD01000190
[OAWD] human gut metagenome; faeces
34314
34241
-
Lys
CTT
[ENA]
¢þ
>WENV180279982
OBHX01184366
[OBHX] metagenome; feces
104
179
+
Lys
CTT
[ENA]
¢þ
>WENV180302441
OBJF01001828
[OBJF] human gut metagenome; feces
13722
13647
-
Lys
CTT
[ENA]
¢þ
>WENV180417304
OBVH01006910
[OBVH] human gut metagenome; faeces
497
422
-
Lys
CTT
[ENA]
¢þ
>WENV180453692
OBXM01000464
[OBXM] human gut metagenome; faeces
7865
7938
+
Lys
CTT
[ENA]
¢þ
>WENV180458876
OBXW01000619
[OBXW] human gut metagenome; faeces
4865
4792
-
Lys
CTT
[ENA]
¢þ
>WENV181027076
ODXC01072540
[ODXC] human metagenome; G_DNA_Stool
76
151
+
Lys
CTT
[ENA]
¢þ
>WENV181100095
OECI01067248
[OECI] human metagenome; G_DNA_Stool
148
223
+
Lys
CTT
[ENA]
¢þ
>WENV181127742
OEFW01011539
[OEFW] human metagenome; G_DNA_Stool
2984
2909
-
Lys
CTT
[ENA]
¢þ
>WENV181128471
OEFW01154424
[OEFW] human metagenome; G_DNA_Stool
189
114
-
Lys
CTT
[ENA]
¢þ
>WENV181196618
OEQY01000835
[OEQY] metagenome; Caecal content
77
2
-
Lys
CTT
[ENA]
¢þ
>WENV181200664
OERL01001952
[OERL] metagenome; Caecal content
3029
2954
-
Lys
CTT
[ENA]
¢þ
>WENV181340058
OFMG01011530
[OFMG] human gut metagenome; human gut
898
971
+
Lys
CTT
[ENA]
¢þ
>WENV181363418
OFOU01000315
[OFOU] human gut metagenome; human gut
2960
3033
+
Lys
CTT
[ENA]
¢þ
>WENV181541882
OGIE01000152
[OGIE] metagenome; Human gut stool
68537
68612
+
Lys
CTT
[ENA]
¢þ
>WENV181572395
OGJQ01003114
[OGJQ] metagenome; Human gut stool
1553
1628
+
Lys
CTT
[ENA]
¢þ
>WENV181572635
OGJQ01028516
[OGJQ] metagenome; Human gut stool
104
179
+
Lys
CTT
[ENA]
¢þ
>WENV181621830
OGMF01017344
[OGMF] metagenome; Human gut stool
563
638
+
Lys
CTT
[ENA]
¢þ
>WENV181710587
OGPO01000391
[OGPO] human gut metagenome; faeces
15538
15611
+
Lys
CTT
[ENA]
¢þ
>WENV181791202
OGRP01021499
[OGRP] human gut metagenome; faeces
76
149
+
Lys
CTT
[ENA]
¢þ
>WENV181795633
OGRT01000512
[OGRT] human gut metagenome; faeces
5417
5344
-
Lys
CTT
[ENA]
¢þ
>WENV181925988
OGYM01018289
[OGYM] human gut metagenome; faeces
104
179
+
Lys
CTT
[ENA]
¢þ
>WENV181967590
OGZV01009839
[OGZV] human gut metagenome; faeces
3479
3554
+
Lys
CTT
[ENA]
¢þ
>WENV181986115
OHAJ01037090
[OHAJ] human gut metagenome; faeces
1075
1000
-
Lys
CTT
[ENA]
¢þ
>WENV182154015
OHLO01001794
[OHLO] human gut metagenome; feces
386
461
+
Lys
CTT
[ENA]
¢þ
>WENV182189569
OHOO01012389
[OHOO] human gut metagenome; feces
86
161
+
Lys
CTT
[ENA]
¢þ
>WENV182609893
OJJV01031121
[OJJV] metagenome; faeces
887
812
-
Lys
CTT
[ENA]
¢þ
>WENV182635488
OJKY01080649
[OJKY] metagenome; faeces
445
520
+
Lys
CTT
[ENA]
¢þ
>WENV182712966
OJPF01018814
[OJPF] human gut metagenome; stool sample
514
589
+
Lys
CTT
[ENA]
¢þ
>WENV182871776
OKRV01000307
[OKRV] human gut metagenome; faeces
23430
23505
+
Lys
CTT
[ENA]
¢þ
>WENV183093794
OLNC01000075
[OLNC] human gut metagenome; faeces
34540
34467
-
Lys
CTT
[ENA]
¢þ
>WENV183116225
OLNQ01076468
[OLNQ] human gut metagenome; faeces
105
180
+
Lys
CTT
[ENA]
¢þ
>WENV183220233
OLQK01029740
[OLQK] human gut metagenome; faeces
759
684
-
Lys
CTT
[ENA]
¢þ
>WENV183313019
OLVP01003654
[OLVP] human gut metagenome; faeces
1893
1966
+
Lys
CTT
[ENA]
¢þ
>WENV183342192
OLWN01003081
[OLWN] human gut metagenome; feces
185
260
+
Lys
CTT
[ENA]
¢þ
>WENV183353921
OLXB01003709
[OLXB] human gut metagenome; feces
133
208
+
Lys
CTT
[ENA]
¢þ
>WENV183463013
OMDX01006256
[OMDX] human gut metagenome; feces
315
240
-
Lys
CTT
[ENA]
¢þ
>WENV183548809
OOAY01001837
[OOAY] human gut metagenome; human gut
1314
1239
-
Lys
CTT
[ENA]
¢þ
>WENV183566649
OOCA01018191
[OOCA] human gut metagenome; human gut
385
460
+
Lys
CTT
[ENA]
¢þ
>WENV183611423
OODT01000238
[OODT] human gut metagenome; human gut
76
151
+
Lys
CTT
[ENA]
¢þ
>WENV183641765
OQVL01075099
[OQVL] human gut metagenome; human gut
593
518
-
Lys
CTT
[ENA]
¢þ
>WENV183643552
OQVO01029556
[OQVO] human gut metagenome; human gut
37
112
+
Lys
CTT
[ENA]
¢þ
>WENV183770769
PPYE01444908
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
48
121
+
Lys
CTT
[ENA]
¢þ
>WENV170083019
CEAA01017553
[CEAA] gut metagenome; human stools
4234
4309
+
Lys
CTT
[ENA]
¢þ
>WENV170083725
CEAA01043066
[CEAA] gut metagenome; human stools
76
1
-
Lys
CTT
[ENA]
¢þ
>WENV170083880
CEAA01049003
[CEAA] gut metagenome; human stools
92498
92423
-
Lys
CTT
[ENA]
¢þ
>WENV170718678
LSQX01086301
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
501
426
-
Lys
CTT
[ENA]
¢þ
>WENV170778990
LXOW01464017
[LXOW] bovine gut metagenome; Cow rumen
2508
2436
-
Lys
CTT
[ENA]
¢þ
>WENV170977833
MTKZ01033092
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
22744
22669
-
Lys
CTT
[ENA]
¢þ
>C181054366
CP021850
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5807 [CP021850]
2086197
2086272
+
Lys
CTT
-
¡û
>C181054396
CP021850
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5807 [CP021850]
1646615
1646540
-
Lys
CTT
-
¡û
>C191165621
CP039381
Bacillota
Ruminococcus bovis JE7A12 [CP039381]
1822132
1822207
+
Lys
CTT
-
¡û
>C191165638
CP039381
Bacillota
Ruminococcus bovis JE7A12 [CP039381]
553115
553040
-
Lys
CTT
-
¡û
>C191165652
CP039381
Bacillota
Ruminococcus bovis JE7A12 [CP039381]
437061
436986
-
Lys
CTT
-
¡û
>W1910927615
NIOK01000013
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5808 [NIOK]
74983
75058
+
Lys
CTT
[ENA]
¡û
>W1910927631
NIOK01000031
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5808 [NIOK]
26863
26938
+
Lys
CTT
[ENA]
¡û
>W1911491387
OAOD01000057
Bacillota
Clostridium peptidivorans [OAOD]
579
504
-
Lys
CTT
[ENA]
¡û
>W1911500854
OEMS01000005
Bacillota
Clostridiales bacterium Marseille-P2846 [OEMS]
1720168
1720093
-
Lys
CTT
[ENA]
¡û
>W1911500872
OEMS01000005
Bacillota
Clostridiales bacterium Marseille-P2846 [OEMS]
1114125
1114050
-
Lys
CTT
[ENA]
¡û
>W1810759892
QPJT01000013
Bacillota
Anaerobacterium chartisolvens DSM 27016 [QPJT]
66704
66629
-
Lys
CTT
[ENA]
¡û
>W1810912643
QVLY01000008
Bacillota
Sellimonas intestinalis AF37-1 [QVLY]
96338
96411
+
Lys
CTT
[ENA]
¡û
>W1810912853
QVMC01000007
Bacillota
Sellimonas intestinalis AF07-16 [QVMC]
96328
96401
+
Lys
CTT
[ENA]
¡û
>W1510647644
CVPG01000006
Bacillota
Drancourtella massiliensis GD1 [CVPG]
760583
760656
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK