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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.360399 (38 seq.)
>A171001452
CP001994
Euryarchaeota
Methanohalophilus mahii DSM 5219 [CP001994]
1611929
1612004
+
Ala
CGC
-
¡û
>A171003024
CP003362
Euryarchaeota
Methanomethylovorans hollandica DSM 15978 [CP003362]
925751
925680
-
Ala
CGC
-
¡û
>A171005403
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
1827255
1827328
+
Ala
CGC
-
¡û
>A171005459
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
1794240
1794313
+
Ala
CGC
-
¡û
>A171005600
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
1587970
1587898
-
Ala
CGC
-
¡û
>A171005615
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
1549995
1550067
+
Ala
CGC
-
¡û
>A171006815
CP017921
Euryarchaeota
Methanohalophilus halophilus Z-7982 [CP017921]
1119119
1119044
-
Ala
CGC
-
¡û
>WENV180345825
OBLN01006905
[OBLN] sediment metagenome; sediment
1
72
+
Ala
CGC
[ENA]
¢þ
>WENV181413038
OGCK01022674
[OGCK] hot springs metagenome; hot spring sediment
1284
1213
-
Ala
CGC
[ENA]
¢þ
>WENV170006536
AMWB02030293
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
274
345
+
Ala
CGC
[ENA]
¢þ
>WENV170007425
AMWB02121311
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
270
341
+
Ala
CGC
[ENA]
¢þ
>WENV170018688
BBPD01000345
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
10927
10856
-
Ala
CGC
[ENA]
¢þ
>WENV170019968
BBPE01002000
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
13120
13049
-
Ala
CGC
[ENA]
¢þ
>WENV170021873
BBPG01003797
[BBPG] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
14925
14996
+
Ala
CGC
[ENA]
¢þ
>At0966
CP000300
Euryarchaeota
Methanococcoides burtonii DSM 6242 [CP000300]
1404391
1404462
+
Ala
CGC
[Ensembl]
¡û
>WENV170669159
LAHR01021640
[LAHR] activated sludge metagenome; Sample C-3; Sludge from acetogenic chamber (third chamber) of Anaerobic Baffled Reactor over
210
139
-
Ala
CGC
[ENA]
¢þ
>WENV170670320
LAHT01001951
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
34781
34852
+
Ala
CGC
[ENA]
¢þ
>WENV170671102
LAHU01013869
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
1099
1028
-
Ala
CGC
[ENA]
¢þ
>WENV170715284
LNQE01001275
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
2182
2111
-
Ala
CGC
[ENA]
¢þ
>WENV170715351
LNQE01001642
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
9406
9335
-
Ala
CGC
[ENA]
¢þ
>WENV170971137
MTKX01001916
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3514
3585
+
Ala
CGC
[ENA]
¢þ
>WENV170971684
MTKX01009707
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3154
3083
-
Ala
CGC
[ENA]
¢þ
>WENV170976727
MTKZ01011300
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2929
2858
-
Ala
CGC
[ENA]
¢þ
>WENV170978967
MTKZ01069166
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
478
549
+
Ala
CGC
[ENA]
¢þ
>W1910228345
FNMU01000006
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
46381
46306
-
Ala
CGC
[ENA]
¡û
>W1910471816
FXBN01000002
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [FXBN]
118050
118125
+
Ala
CGC
[ENA]
¡û
>W1910569657
JJOZ01000044
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
142691
142619
-
Ala
CGC
[ENA]
¡û
>W1910572261
JJQY01000053
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
31054
31126
+
Ala
CGC
[ENA]
¡û
>W1910582982
JWTK01000004
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [JWTK]
47990
48065
+
Ala
CGC
[ENA]
¡û
>W1910655388
LZPK01000122
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
3654
3582
-
Ala
CGC
[ENA]
¡û
>W1910672553
MCNQ01000009
Euryarchaeota
Methanohalophilus sp. 2-GBenrich [MCNQ]
53653
53581
-
Ala
CGC
[ENA]
¡û
>W1911492141
OBDR01000009
Euryarchaeota
Methanohalophilus euhalobius WG-1MB [OBDR]
54298
54226
-
Ala
CGC
[ENA]
¡û
>W1911633780
PVBU01000013
Euryarchaeota
Methanohalophilus euhalobius DSM 10369 [PVBU]
15186
15114
-
Ala
CGC
[ENA]
¡û
>W1911653211
QBKB01000002
Euryarchaeota
Methanohalophilus profundi SLHTYRO [QBKB]
1485315
1485240
-
Ala
CGC
[ENA]
¡û
>W1610004231
AGIY02000001
Euryarchaeota
Methanolinea tarda NOBI-1 [AGIY]
214131
214204
+
Ala
CGC
[ENA]
¡û
>W1610048598
BBEF01000014
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
1551
1623
+
Ala
CGC
[ENA]
¡û
>W1610686036
LKUF01000384
Euryarchaeota
Methanolinea sp. SDB [LKUF]
1358
1287
-
Ala
CGC
[ENA]
¡û
>W1611052493
MAFX01000011
Euryarchaeota
Methanohalophilus sp. DAL1 [MAFX]
64495
64567
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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