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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.360607 (34 seq.)
>W131176042
ARJS01000046
Alphaproteobacteria
Saccharibacter floricola DSM 15669 [ARJS]
187489
187563
+
Met
CAT
[ENA]
¡û
>W1711386718
MEFR01000118
Alphaproteobacteria
Acetobacteraceae bacterium SCN 69-10 [MEFR]
2030
1956
-
Met
CAT
[ENA]
¡û
>C000488
CP000697
Alphaproteobacteria
Acidiphilium cryptum JF-5 [CP000697]
1711813
1711887
+
Met
CAT
[Ensembl]
¡û
>WENV180584828
OCOJ01516060
[OCOJ] soil metagenome; soil
84
10
-
Met
CAT
[ENA]
¢þ
>W141082085
ATSX01000005
Alphaproteobacteria
Commensalibacter papalotli (ex Servin-Garciduenas et al. 2014) MX01 [ATSX]
23870
23944
+
Met
CAT
[ENA]
¡û
>WENV181155704
OEID01365801
[OEID] soil metagenome; soil
158
84
-
Met
CAT
[ENA]
¢þ
>WENV181296000
OFHJ01003890
[OFHJ] soil metagenome; Clay
819
746
-
Met
CAT
[ENA]
¢þ
>W141224547
BAIN01000001
Alphaproteobacteria
Acetobacter papayae JCM 25143 [BAIN]
42782
42708
-
Met
CAT
[ENA]
¡û
>W141462265
JFHO01000095
Alphaproteobacteria
Acidiphilium sp. JA12-A1 [JFHO]
6953
6879
-
Met
CAT
[ENA]
¡û
>C181175689
CP029176
Alphaproteobacteria
Acidibrevibacterium fodinaquatile G45-3 [CP029176]
1123133
1123207
+
Met
CAT
-
¡û
>C191100482
CP033087
Alphaproteobacteria
Commensalibacter melissae AMU001 [CP033087]
199321
199395
+
Met
CAT
-
¡û
>C191157849
CP038143
Alphaproteobacteria
Oecophyllibacter saccharovorans Ha5 [CP038143]
121805
121879
+
Met
CAT
-
¡û
>C191158406
CP038231
Alphaproteobacteria
Formicincola oecophyllae F3b2 [CP038231]
125170
125244
+
Met
CAT
-
¡û
>C191166423
CP039459
Alphaproteobacteria
Acetobacteraceae bacterium 880 [CP039459]
81042
81116
+
Met
CAT
-
¡û
>C191166481
CP039460
Alphaproteobacteria
Acetobacteraceae bacterium 868 [CP039460]
80725
80799
+
Met
CAT
-
¡û
>W1910913937
NHRY01000036
Alphaproteobacteria
Rhodopila globiformis DSM 161 [NHRY]
2235
2161
-
Met
CAT
[ENA]
¡û
>W1910913976
NHRY01000239
Alphaproteobacteria
Rhodopila globiformis DSM 161 [NHRY]
55352
55278
-
Met
CAT
[ENA]
¡û
>W1911705936
QORV01000052
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60006 [QORV]
21488
21414
-
Met
CAT
[ENA]
¡û
>W1911706004
QORW01000007
Alphaproteobacteria
Dongia deserti SYSU D60009 [QORW]
228328
228402
+
Met
CAT
[ENA]
¡û
>W1810604042
QGLT01000005
Alphaproteobacteria
Commensalibacter melissae ESL0284 [QGLT]
53383
53457
+
Met
CAT
[ENA]
¡û
>W1510011577
BBMU01000206
Alphaproteobacteria
Acetobacter tropicalis NBRC 16470 [BBMU]
95640
95566
-
Met
CAT
[ENA]
¡û
>C11100946
AP012035
Alphaproteobacteria
Acidiphilium multivorum AIU301 [AP012035]
1782055
1782129
+
Met
CAT
[Ensembl]
¡û
>W11170634
AFPR01000192
Alphaproteobacteria
Acidiphilium sp. PM [AFPR]
839
913
+
Met
CAT
[ENA]
¡û
>W11179032
AGFR01000013
Alphaproteobacteria
Commensalibacter intestini A911 [AGFR]
10304
10230
-
Met
CAT
[ENA]
¡û
>W1610040970
BANA01000247
Alphaproteobacteria
Acidiphilium multivorum AIU301 [BANA]
8296
8222
-
Met
CAT
[ENA]
¡û
>W1610041042
BANC01000034
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [BANC]
32233
32159
-
Met
CAT
[ENA]
¡û
>W1610624736
LHZQ01000220
Alphaproteobacteria
Acetobacter tropicalis [LHZQ]
29249
29323
+
Met
CAT
[ENA]
¡û
>W1710038168
BANA01000247
Alphaproteobacteria
Acidiphilium multivorum AIU301 [BANA]
8296
8222
-
Met
CAT
[ENA]
¡û
>W1710038240
BANC01000034
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [BANC]
32233
32159
-
Met
CAT
[ENA]
¡û
>W1710584189
FQVJ01000005
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [FQVJ]
119557
119631
+
Met
CAT
[ENA]
¡û
>W1710613492
JATM01000001
Alphaproteobacteria
Bombella intestini [JATM]
488472
488546
+
Met
CAT
[ENA]
¡û
>W1710624605
JOPB01000022
Alphaproteobacteria
Commensalibacter intestini [JOPB]
24685
24759
+
Met
CAT
[ENA]
¡û
>W1710624836
JOPI01000014
Alphaproteobacteria
Acetobacter sp. DsW_059 [JOPI]
135137
135211
+
Met
CAT
[ENA]
¡û
>W1710755854
LHZQ01000220
Alphaproteobacteria
Acetobacter tropicalis [LHZQ]
29249
29323
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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