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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.361238 (52 seq.)
>W1710921769
LNZY01000023
Alphaproteobacteria
Bartonella henselae [LNZY]
23966
23892
-
Gly
GCC
[ENA]
¡û
>W1710989817
LPWE01000010
Alphaproteobacteria
Methyloceanibacter stevinii [LPWE]
430444
430370
-
Gly
GCC
[ENA]
¡û
>W1710989878
LPWF01000026
Alphaproteobacteria
Methyloceanibacter superfactus [LPWF]
8330
8256
-
Gly
GCC
[ENA]
¡û
>W1711018287
LQWW01000001
Alphaproteobacteria
Bartonella bacilliformis [LQWW]
166654
166728
+
Gly
GCC
[ENA]
¡û
>W1711229757
LXYS01000001
Alphaproteobacteria
Bartonella apis [LXYS]
622620
622694
+
Gly
GCC
[ENA]
¡û
>W1711229809
LXYT01000001
Alphaproteobacteria
Bartonella apis [LXYT]
959913
959839
-
Gly
GCC
[ENA]
¡û
>W1711738578
MUBG01000001
Alphaproteobacteria
Bartonella sp. WD12.1 [MUBG]
1516186
1516260
+
Gly
GCC
[ENA]
¡û
>W1711766840
MUYW01000112
Alphaproteobacteria
Bartonella taylorii [MUYW]
178
252
+
Gly
GCC
[ENA]
¡û
>C171040318
CP015625
Alphaproteobacteria
Bartonella choladocola BBC0122 [CP015625]
2853963
2853889
-
Gly
GCC
-
¡û
>C171041704
CP015820
Alphaproteobacteria
Bartonella apihabitans BBC0178 [CP015820]
2547604
2547530
-
Gly
GCC
-
¡û
>C171099854
CP019788
Alphaproteobacteria
Bartonella sp. JB63 [CP019788]
1319864
1319938
+
Gly
GCC
-
¡û
>W131166458
ARCM01000002
Alphaproteobacteria
Ancylobacter sp. FA202 [ARCM]
923415
923341
-
Gly
GCC
[ENA]
¡û
>W141006824
AGWC01000009
Alphaproteobacteria
Bartonella schoenbuchensis m07a [AGWC]
272923
272997
+
Gly
GCC
[ENA]
¡û
>W141006867
AGWD01000027
Alphaproteobacteria
Bartonella vinsonii subsp. berkhoffii str. Tweed [AGWD]
209708
209782
+
Gly
GCC
[ENA]
¡û
>WENV180094971
MTBK01041564
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
536
610
+
Gly
GCC
[ENA]
¢þ
>WENV180105534
OAPD01088195
[OAPD] marine metagenome; 2010
106
180
+
Gly
GCC
[ENA]
¢þ
>W141010024
AHPK01000013
Alphaproteobacteria
Bartonella rochalimae ATCC BAA-1498 [AHPK]
147020
146946
-
Gly
GCC
[ENA]
¡û
>W141071149
ASIS01000001
Alphaproteobacteria
Bartonella bacilliformis Hosp800-02 [ASIS]
50860
50786
-
Gly
GCC
[ENA]
¡û
>W141071351
ASIX01000001
Alphaproteobacteria
Bartonella bacilliformis VAB9028 [ASIX]
50864
50790
-
Gly
GCC
[ENA]
¡û
>WENV181145423
OEHO01296586
[OEHO] metagenome; unknown
42
116
+
Gly
GCC
[ENA]
¢þ
>WENV181234388
OFEU01000094
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
38782
38708
-
Gly
GCC
[ENA]
¢þ
>WENV181311347
OFJB01000964
[OFJB] sludge metagenome; sludge
11521
11447
-
Gly
GCC
[ENA]
¢þ
>WENV181402385
OFTY01001010
[OFTY] sludge metagenome; sludge
11520
11446
-
Gly
GCC
[ENA]
¢þ
>W141222692
AZZX01000006
Alphaproteobacteria
Bartonella quintana JK 73 [AZZX]
71019
71093
+
Gly
GCC
[ENA]
¡û
>W141245886
CALV01000017
Alphaproteobacteria
Bartonella senegalensis OS02 [CALV]
26472
26398
-
Gly
GCC
[ENA]
¡û
>W141245927
CALW02000031
Alphaproteobacteria
Bartonella rattaustraliani AUST/NH4 [CALW]
23582
23656
+
Gly
GCC
[ENA]
¡û
>W141245964
CALX01000212
Alphaproteobacteria
Bartonella queenslandensis AUST/NH15 [CALX]
123
49
-
Gly
GCC
[ENA]
¡û
>W141279615
JAGL01000004
Alphaproteobacteria
Aminobacter sp. J41 [JAGL]
86980
87054
+
Gly
GCC
[ENA]
¡û
>W141279616
JAGL01000004
Alphaproteobacteria
Aminobacter sp. J41 [JAGL]
87195
87269
+
Gly
GCC
[ENA]
¡û
>WENV170962316
MRWF01011701
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
484
558
+
Gly
GCC
[ENA]
¢þ
>C181046383
CP020742
Alphaproteobacteria
Bartonella henselae Houston-I [CP020742]
1904396
1904470
+
Gly
GCC
-
¡û
>W141554790
JHPR01000003
Alphaproteobacteria
Bartonella bacilliformis Peru-18 [JHPR]
104409
104483
+
Gly
GCC
[ENA]
¡û
>W1910285146
FREW01000004
Alphaproteobacteria
Labrenzia sp. Alg231-36 [FREW]
459691
459617
-
Gly
GCC
[ENA]
¡û
>W1910859314
NBYO01000001
Alphaproteobacteria
Notoacmeibacter marinus XMTR2A4 [NBYO]
1053915
1053841
-
Gly
GCC
[ENA]
¡û
>W1910942141
NJGE01000010
Alphaproteobacteria
Bartonella tribocorum L103 [NJGE]
1168
1094
-
Gly
GCC
[ENA]
¡û
>W1810625989
QHKP01000004
Alphaproteobacteria
Notoacmeibacter marinus HMA008 [QHKP]
513389
513463
+
Gly
GCC
[ENA]
¡û
>W1810725522
QODK01000001
Alphaproteobacteria
Cohaesibacter intestini YE-B6 [QODK]
940629
940703
+
Gly
GCC
[ENA]
¡û
>C151067966
CP010401
Alphaproteobacteria
Bartonella ancashensis 20.00 [CP010401]
445863
445937
+
Gly
GCC
-
¡û
>C161064381
CP014012
Alphaproteobacteria
Bartonella bacilliformis ATCC 35685D-5 [CP014012]
94395
94321
-
Gly
GCC
-
¡û
>W121059198
AILW01000004
Alphaproteobacteria
Bartonella elizabethae Re6043vi [AILW]
62610
62684
+
Gly
GCC
[ENA]
¡û
>W121059241
AILX01000012
Alphaproteobacteria
Bartonella washoeensis 085-0475 [AILX]
241984
241910
-
Gly
GCC
[ENA]
¡û
>W121059449
AIMC01000032
Alphaproteobacteria
Bartonella birtlesii LL-WM9 [AIMC]
193919
193845
-
Gly
GCC
[ENA]
¡û
>W121059459
AIMD01000013
Alphaproteobacteria
Bartonella taylorii 8TBB [AIMD]
57169
57243
+
Gly
GCC
[ENA]
¡û
>W121084675
AKIP01000035
Alphaproteobacteria
Bartonella birtlesii IBS 325 [AKIP]
17107
17181
+
Gly
GCC
[ENA]
¡û
>W1610092253
CXWE01000003
Alphaproteobacteria
Roseibium album alba [CXWE]
258461
258387
-
Gly
GCC
[ENA]
¡û
>W1610866763
LQWW01000001
Alphaproteobacteria
Bartonella bacilliformis [LQWW]
166654
166728
+
Gly
GCC
[ENA]
¡û
>W1710015690
AQRB01000001
Alphaproteobacteria
Stappia sp. 22II-S9-Z10 [AQRB]
654027
654101
+
Gly
GCC
[ENA]
¡û
>W1710095610
CXWE01000003
Alphaproteobacteria
Roseibium album alba [CXWE]
258461
258387
-
Gly
GCC
[ENA]
¡û
>W1710508125
FMVW01000003
Alphaproteobacteria
Afifella marina DSM 2698 [FMVW]
398144
398218
+
Gly
GCC
[ENA]
¡û
>W1710571161
FOVR01000011
Alphaproteobacteria
Cohaesibacter marisflavi [FOVR]
42435
42509
+
Gly
GCC
[ENA]
¡û
>W1710606293
FWXR01000016
Alphaproteobacteria
Fulvimarina manganoxydans [FWXR]
41943
41869
-
Gly
GCC
[ENA]
¡û
>W1710721093
LFMF01000003
Alphaproteobacteria
Bartonella elizabethae [LFMF]
204068
203994
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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