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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.361897 (121 seq.)
>W131238366
BAHT02000144
Bacillota
Clostridiales bacterium VE202-06 [BAHT]
71329
71401
+
Glu
CTC
[ENA]
¡û
>W131238367
BAHT02000144
Bacillota
Clostridiales bacterium VE202-06 [BAHT]
71453
71527
+
Glu
CTC
[ENA]
¡û
>WENV180124009
OASX01001090
[OASX] human gut metagenome; faeces
2700
2628
-
Glu
CTC
[ENA]
¢þ
>WENV180124010
OASX01001090
[OASX] human gut metagenome; faeces
2593
2521
-
Glu
CTC
[ENA]
¢þ
>WENV180124011
OASX01001090
[OASX] human gut metagenome; faeces
2486
2414
-
Glu
CTC
[ENA]
¢þ
>WENV180139384
OATT01000062
[OATT] human gut metagenome; faeces
86302
86374
+
Glu
CTC
[ENA]
¢þ
>WENV180139385
OATT01000062
[OATT] human gut metagenome; faeces
86409
86481
+
Glu
CTC
[ENA]
¢þ
>WENV180139386
OATT01000062
[OATT] human gut metagenome; faeces
86516
86588
+
Glu
CTC
[ENA]
¢þ
>WENV180162133
OAVG01000177
[OAVG] human gut metagenome; faeces
25979
25907
-
Glu
CTC
[ENA]
¢þ
>WENV180162134
OAVG01000177
[OAVG] human gut metagenome; faeces
25872
25800
-
Glu
CTC
[ENA]
¢þ
>WENV180162135
OAVG01000177
[OAVG] human gut metagenome; faeces
25765
25693
-
Glu
CTC
[ENA]
¢þ
>WENV180163377
OAVH01006160
[OAVH] human gut metagenome; faeces
126
198
+
Glu
CTC
[ENA]
¢þ
>WENV180278129
OBHX01002211
[OBHX] metagenome; feces
1516
1588
+
Glu
CTC
[ENA]
¢þ
>WENV180280760
OBIA01000180
[OBIA] human gut metagenome; human gut
37489
37561
+
Glu
CTC
[ENA]
¢þ
>WENV180326835
OBKS01194769
[OBKS] human gut metagenome; human gut
116
188
+
Glu
CTC
[ENA]
¢þ
>WENV180334807
OBLF01059843
[OBLF] metagenome; feces
633
561
-
Glu
CTC
[ENA]
¢þ
>WENV180442305
OBWW01038181
[OBWW] human gut metagenome; faeces
247
319
+
Glu
CTC
[ENA]
¢þ
>WENV180461895
OBYA01052247
[OBYA] human gut metagenome; faeces
160
88
-
Glu
CTC
[ENA]
¢þ
>WENV180471968
OBYP01034161
[OBYP] human gut metagenome; faeces
173
245
+
Glu
CTC
[ENA]
¢þ
>WENV180513139
OCHA01009844
[OCHA] human gut metagenome; human gut
1510
1582
+
Glu
CTC
[ENA]
¢þ
>WENV180523067
OCHG01006531
[OCHG] human gut metagenome; human gut
3683
3611
-
Glu
CTC
[ENA]
¢þ
>WENV180539968
OCHP01203584
[OCHP] human gut metagenome; human gut
57
129
+
Glu
CTC
[ENA]
¢þ
>WENV180544873
OCIR01068655
[OCIR] human gut metagenome; human gut
170
98
-
Glu
CTC
[ENA]
¢þ
>WENV180567925
OCLM01012148
[OCLM] human gut metagenome; human gut
1244
1316
+
Glu
CTC
[ENA]
¢þ
>WENV180608345
OCPU01031469
[OCPU] human gut metagenome; human gut
292
364
+
Glu
CTC
[ENA]
¢þ
>WENV180612320
OCPX01000988
[OCPX] human gut metagenome; human gut
22999
23071
+
Glu
CTC
[ENA]
¢þ
>WENV180625558
OCQL01012255
[OCQL] human gut metagenome; human gut
1244
1316
+
Glu
CTC
[ENA]
¢þ
>WENV180628975
OCQP01012575
[OCQP] human gut metagenome; human gut
272
200
-
Glu
CTC
[ENA]
¢þ
>WENV180630379
OCQT01038359
[OCQT] human gut metagenome; human gut
447
519
+
Glu
CTC
[ENA]
¢þ
>WENV180648952
OCSJ01203976
[OCSJ] human gut metagenome; human gut
234
162
-
Glu
CTC
[ENA]
¢þ
>WENV180649218
OCSK01009667
[OCSK] human gut metagenome; human gut
270
198
-
Glu
CTC
[ENA]
¢þ
>WENV180655217
OCVV010413165
[OCVV] gut metagenome; gut
159
87
-
Glu
CTC
[ENA]
¢þ
>WENV180655218
OCVV010413165
[OCVV] gut metagenome; gut
159
87
-
Glu
CTC
[ENA]
¢þ
>WENV180685645
OCVV012875200
[OCVV] gut metagenome; gut
147345
147417
+
Glu
CTC
[ENA]
¢þ
>WENV180685651
OCVV012875200
[OCVV] gut metagenome; gut
147345
147417
+
Glu
CTC
[ENA]
¢þ
>WENV180685877
OCVV012878410
[OCVV] gut metagenome; gut
8998
9070
+
Glu
CTC
[ENA]
¢þ
>WENV180685878
OCVV012878410
[OCVV] gut metagenome; gut
8998
9070
+
Glu
CTC
[ENA]
¢þ
>WENV180837920
ODKG01014238
[ODKG] human metagenome; G_DNA_Stool
1297
1225
-
Glu
CTC
[ENA]
¢þ
>WENV181194849
OEQR01007935
[OEQR] metagenome; Caecal content
1099
1028
-
Glu
CTC
[ENA]
¢þ
>WENV181236306
OFEZ01000220
[OFEZ] mouse gut metagenome; faeces
25001
24928
-
Glu
CTC
[ENA]
¢þ
>WENV181239530
OFFD01001395
[OFFD] mouse gut metagenome; faeces
5649
5722
+
Glu
CTC
[ENA]
¢þ
>WENV181254504
OFFR01012032
[OFFR] mouse gut metagenome; faeces
1089
1162
+
Glu
CTC
[ENA]
¢þ
>WENV181255997
OFFT01000075
[OFFT] mouse gut metagenome; faeces
14022
13949
-
Glu
CTC
[ENA]
¢þ
>WENV181259627
OFFW01000822
[OFFW] mouse gut metagenome; faeces
6537
6610
+
Glu
CTC
[ENA]
¢þ
>WENV181284225
OFGR01000337
[OFGR] mouse gut metagenome; faeces
24260
24333
+
Glu
CTC
[ENA]
¢þ
>WENV181303380
OFHP01009842
[OFHP] mouse gut metagenome; faeces
1103
1176
+
Glu
CTC
[ENA]
¢þ
>WENV181329978
OFLY01000835
[OFLY] human gut metagenome; human gut
1425
1353
-
Glu
CTC
[ENA]
¢þ
>WENV181339759
OFMG01001462
[OFMG] human gut metagenome; human gut
1429
1501
+
Glu
CTC
[ENA]
¢þ
>WENV181435216
OGDF01002761
[OGDF] human gut metagenome; human gut
22210
22282
+
Glu
CTC
[ENA]
¢þ
>WENV181440662
OGDN01001737
[OGDN] human gut metagenome; human gut
13305
13377
+
Glu
CTC
[ENA]
¢þ
>WENV181535216
OGHU01008948
[OGHU] metagenome; Human gut stool
3026
2954
-
Glu
CTC
[ENA]
¢þ
>WENV181689608
OGOY01003280
[OGOY] human gut metagenome; faeces
12037
12109
+
Glu
CTC
[ENA]
¢þ
>WENV181793271
OGRR01001157
[OGRR] human gut metagenome; faeces
16495
16423
-
Glu
CTC
[ENA]
¢þ
>WENV181872942
OGWZ01012207
[OGWZ] human gut metagenome; faeces
1495
1567
+
Glu
CTC
[ENA]
¢þ
>WENV181973480
OHAA01056565
[OHAA] human gut metagenome; faeces
553
481
-
Glu
CTC
[ENA]
¢þ
>WENV182127966
OHJX01008981
[OHJX] human gut metagenome; feces
590
519
-
Glu
CTC
[ENA]
¢þ
>WENV182288430
OHVT01010207
[OHVT] human gut metagenome; feces
727
655
-
Glu
CTC
[ENA]
¢þ
>WENV182345423
OIAN01007961
[OIAN] human gut metagenome; feces
1451
1523
+
Glu
CTC
[ENA]
¢þ
>WENV182488395
OIRZ01011009
[OIRZ] human gut metagenome; human gut
717
789
+
Glu
CTC
[ENA]
¢þ
>WENV183097915
OLNE01018957
[OLNE] human gut metagenome; faeces
727
655
-
Glu
CTC
[ENA]
¢þ
>WENV183101676
OLNH01000691
[OLNH] human gut metagenome; faeces
9547
9618
+
Glu
CTC
[ENA]
¢þ
>WENV183107103
OLNM01000713
[OLNM] human gut metagenome; faeces
6415
6343
-
Glu
CTC
[ENA]
¢þ
>WENV183118619
OLNT01000011
[OLNT] human gut metagenome; faeces
121726
121798
+
Glu
CTC
[ENA]
¢þ
>WENV183124009
OLNW01004884
[OLNW] human gut metagenome; faeces
3661
3589
-
Glu
CTC
[ENA]
¢þ
>WENV183133300
OLOB01066065
[OLOB] human gut metagenome; faeces
544
472
-
Glu
CTC
[ENA]
¢þ
>WENV183133813
OLOC01000846
[OLOC] human gut metagenome; faeces
19343
19415
+
Glu
CTC
[ENA]
¢þ
>WENV183139634
OLOI01001204
[OLOI] human gut metagenome; faeces
1549
1477
-
Glu
CTC
[ENA]
¢þ
>WENV183141887
OLOJ01022459
[OLOJ] human gut metagenome; faeces
1572
1644
+
Glu
CTC
[ENA]
¢þ
>WENV183167353
OLOZ01000119
[OLOZ] human gut metagenome; faeces
29560
29632
+
Glu
CTC
[ENA]
¢þ
>WENV183173838
OLPE01000021
[OLPE] human gut metagenome; faeces
16336
16264
-
Glu
CTC
[ENA]
¢þ
>WENV183177260
OLPG01000639
[OLPG] human gut metagenome; faeces
16366
16294
-
Glu
CTC
[ENA]
¢þ
>WENV183183363
OLPL01000133
[OLPL] human gut metagenome; faeces
40222
40150
-
Glu
CTC
[ENA]
¢þ
>WENV183186904
OLPO01003385
[OLPO] human gut metagenome; faeces
1299
1227
-
Glu
CTC
[ENA]
¢þ
>WENV183188246
OLPP01000265
[OLPP] human gut metagenome; faeces
36180
36252
+
Glu
CTC
[ENA]
¢þ
>WENV183194894
OLPT01000703
[OLPT] human gut metagenome; faeces
9398
9326
-
Glu
CTC
[ENA]
¢þ
>WENV183202892
OLPY01000022
[OLPY] human gut metagenome; faeces
132868
132940
+
Glu
CTC
[ENA]
¢þ
>WENV183213729
OLQE01000063
[OLQE] human gut metagenome; faeces
86573
86644
+
Glu
CTC
[ENA]
¢þ
>WENV183215406
OLQG01001527
[OLQG] human gut metagenome; faeces
726
654
-
Glu
CTC
[ENA]
¢þ
>WENV183217851
OLQI01002763
[OLQI] human gut metagenome; faeces
6981
7053
+
Glu
CTC
[ENA]
¢þ
>WENV183230947
OLQT01015623
[OLQT] human gut metagenome; faeces
1514
1586
+
Glu
CTC
[ENA]
¢þ
>WENV183233333
OLQV01000693
[OLQV] human gut metagenome; faeces
16376
16304
-
Glu
CTC
[ENA]
¢þ
>WENV183255023
OLRJ01041413
[OLRJ] human gut metagenome; faeces
106
178
+
Glu
CTC
[ENA]
¢þ
>WENV183263329
OLRR01000119
[OLRR] human gut metagenome; faeces
18286
18214
-
Glu
CTC
[ENA]
¢þ
>WENV183272431
OLRW01033709
[OLRW] human gut metagenome; faeces
85
157
+
Glu
CTC
[ENA]
¢þ
>WENV183291864
OLSI01030835
[OLSI] human gut metagenome; faeces
613
541
-
Glu
CTC
[ENA]
¢þ
>WENV183403413
OLZW01000099
[OLZW] human gut metagenome; feces
34440
34368
-
Glu
CTC
[ENA]
¢þ
>WENV183500519
OMGQ01023505
[OMGQ] human gut metagenome; human gut
927
855
-
Glu
CTC
[ENA]
¢þ
>WENV170638246
JFBN01452529
[JFBN] chicken gut metagenome; ceca of Broiler chicken
90
161
+
Glu
CTC
[ENA]
¢þ
>C191147561
CP035945
Bacillota
Blautia producta PMF1 [CP035945]
3386696
3386624
-
Glu
CTC
-
¡û
>C191147562
CP035945
Bacillota
Blautia producta PMF1 [CP035945]
3386571
3386499
-
Glu
CTC
-
¡û
>W09117905
ACCL02000025
Bacillota
Marvinbryantia formatexigens DSM 14469 [ACCL]
22549
22621
+
Glu
CTC
[ENA]
¡û
>W1911180225
NQOF01000001
Bacillota
Blautia hominis KB1 [NQOF]
152033
152105
+
Glu
CTC
[ENA]
¡û
>W1911180226
NQOF01000001
Bacillota
Blautia hominis KB1 [NQOF]
152154
152226
+
Glu
CTC
[ENA]
¡û
>W1911180227
NQOF01000001
Bacillota
Blautia hominis KB1 [NQOF]
152273
152345
+
Glu
CTC
[ENA]
¡û
>W1911532860
OIWX01000001
Bacillota
Blautia marasmi Marseille-P2377 [OIWX]
4308528
4308456
-
Glu
CTC
[ENA]
¡û
>W1911532861
OIWX01000001
Bacillota
Blautia marasmi Marseille-P2377 [OIWX]
4308407
4308335
-
Glu
CTC
[ENA]
¡û
>W1911532862
OIWX01000001
Bacillota
Blautia marasmi Marseille-P2377 [OIWX]
4308288
4308216
-
Glu
CTC
[ENA]
¡û
>W1810252095
PQGB01000030
Bacillota
Blautia producta DSM 3507 [PQGB]
2416
2488
+
Glu
CTC
[ENA]
¡û
>W1810252096
PQGB01000030
Bacillota
Blautia producta DSM 3507 [PQGB]
2523
2595
+
Glu
CTC
[ENA]
¡û
>W1810596981
QGGY01000005
Bacillota
Murimonas intestini DSM 26524 [QGGY]
213198
213126
-
Glu
CTC
[ENA]
¡û
>W1810862705
QTUS01000010
Bacillota
Blautia sp. AM16-16B [QTUS]
126403
126475
+
Glu
CTC
[ENA]
¡û
>W1810870632
QUCK01000001
Bacillota
Blautia sp. AM22-22LB [QUCK]
281495
281567
+
Glu
CTC
[ENA]
¡û
>W1810873753
QUER01000005
Bacillota
Blautia sp. OF01-4LB [QUER]
95908
95836
-
Glu
CTC
[ENA]
¡û
>W1810873754
QUER01000005
Bacillota
Blautia sp. OF01-4LB [QUER]
95801
95729
-
Glu
CTC
[ENA]
¡û
>W1810873755
QUER01000005
Bacillota
Blautia sp. OF01-4LB [QUER]
95694
95622
-
Glu
CTC
[ENA]
¡û
>W1810874986
QUFQ01000002
Bacillota
Blautia sp. AF25-12LB [QUFQ]
91686
91758
+
Glu
CTC
[ENA]
¡û
>W1810877519
QUHN01000008
Bacillota
Blautia sp. AF13-16 [QUHN]
138024
138096
+
Glu
CTC
[ENA]
¡û
>W1810877520
QUHN01000008
Bacillota
Blautia sp. AF13-16 [QUHN]
138131
138203
+
Glu
CTC
[ENA]
¡û
>W1810877521
QUHN01000008
Bacillota
Blautia sp. AF13-16 [QUHN]
138238
138310
+
Glu
CTC
[ENA]
¡û
>W1810881465
QUKH01000010
Bacillota
Blautia sp. TF11-31AT [QUKH]
34549
34477
-
Glu
CTC
[ENA]
¡û
>W1810884251
QUMM01000024
Bacillota
Lachnospiraceae bacterium OF09-6 [QUMM]
9320
9248
-
Glu
CTC
[ENA]
¡û
>W1511303238
JPJF01000041
Bacillota
Blautia producta ER3 [JPJF]
98449
98377
-
Glu
CTC
[ENA]
¡û
>W1511303239
JPJF01000041
Bacillota
Blautia producta ER3 [JPJF]
98342
98270
-
Glu
CTC
[ENA]
¡û
>W1511303240
JPJF01000041
Bacillota
Blautia producta ER3 [JPJF]
98235
98161
-
Glu
CTC
[ENA]
¡û
>C161087320
CP015405
Bacillota
Blautia pseudococcoides YL58 [CP015405]
2528581
2528653
+
Glu
CTC
[Ensembl]
¡û
>C161087321
CP015405
Bacillota
Blautia pseudococcoides YL58 [CP015405]
2528702
2528774
+
Glu
CTC
[Ensembl]
¡û
>C161087322
CP015405
Bacillota
Blautia pseudococcoides YL58 [CP015405]
2528821
2528895
+
Glu
CTC
[Ensembl]
¡û
>W1610058240
BBZR01000019
Bacillota
Clostridia bacterium UC5.1-1D4 [BBZR]
95466
95394
-
Glu
CTC
[ENA]
¡û
>W1610058241
BBZR01000019
Bacillota
Clostridia bacterium UC5.1-1D4 [BBZR]
95359
95287
-
Glu
CTC
[ENA]
¡û
>W1710054999
BBZR01000019
Bacillota
Clostridia bacterium UC5.1-1D4 [BBZR]
95466
95394
-
Glu
CTC
[ENA]
¡û
>W1710055000
BBZR01000019
Bacillota
Clostridia bacterium UC5.1-1D4 [BBZR]
95359
95287
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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