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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.362179 (129 seq.)
>W1711138546
LVDY01000005
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDY]
37755
37680
-
Asn
GTT
[ENA]
¡û
>W1711138578
LVDZ01000002
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDZ]
76632
76557
-
Asn
GTT
[ENA]
¡û
>W1711138594
LVDZ01000011
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDZ]
37755
37680
-
Asn
GTT
[ENA]
¡û
>W1711139088
LVEQ01000019
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEQ]
3228
3303
+
Asn
GTT
[ENA]
¡û
>W1711139093
LVEQ01000022
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEQ]
202039
201964
-
Asn
GTT
[ENA]
¡û
>W1711139117
LVER01000022
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVER]
148574
148499
-
Asn
GTT
[ENA]
¡û
>W1711139177
LVES01000007
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVES]
2808
2883
+
Asn
GTT
[ENA]
¡û
>W1711139193
LVES01000024
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVES]
180579
180504
-
Asn
GTT
[ENA]
¡û
>W1711139213
LVET01000012
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVET]
65
140
+
Asn
GTT
[ENA]
¡û
>W1711139240
LVET01000053
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVET]
145815
145740
-
Asn
GTT
[ENA]
¡û
>W1711139286
LVEV01000001
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEV]
65
140
+
Asn
GTT
[ENA]
¡û
>W1711139350
LVEW01000033
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEW]
217634
217559
-
Asn
GTT
[ENA]
¡û
>W1711139415
LVEY01000010
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEY]
37755
37680
-
Asn
GTT
[ENA]
¡û
>W1711139451
LVEY01000070
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEY]
65
140
+
Asn
GTT
[ENA]
¡û
>W1711139478
LVEZ01000032
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEZ]
183443
183368
-
Asn
GTT
[ENA]
¡û
>W1711139525
LVFA01000061
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFA]
274
349
+
Asn
GTT
[ENA]
¡û
>W1711139552
LVFB01000031
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFB]
183485
183410
-
Asn
GTT
[ENA]
¡û
>W1711139575
LVFC01000009
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFC]
37754
37679
-
Asn
GTT
[ENA]
¡û
>W1711139611
LVFC01000041
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFC]
181426
181351
-
Asn
GTT
[ENA]
¡û
>W1711139703
LVFE01000033
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFE]
183305
183230
-
Asn
GTT
[ENA]
¡û
>WENV180154179
OAUS01033035
[OAUS] human gut metagenome; faeces
541
466
-
Asn
GTT
[ENA]
¢þ
>WENV180405707
OBTM01089563
[OBTM] human gut metagenome; ENVO:feces
242
167
-
Asn
GTT
[ENA]
¢þ
>WENV180433437
OBWJ01013697
[OBWJ] human gut metagenome; faeces
68
143
+
Asn
GTT
[ENA]
¢þ
>WENV181340616
OFMH01000639
[OFMH] human gut metagenome; human gut
23514
23439
-
Asn
GTT
[ENA]
¢þ
>WENV181363623
OFOU01000916
[OFOU] human gut metagenome; human gut
20697
20622
-
Asn
GTT
[ENA]
¢þ
>WENV181427960
OGCU01000461
[OGCU] metagenome; Human gut stool
18815
18740
-
Asn
GTT
[ENA]
¢þ
>WENV181438663
OGDJ01001216
[OGDJ] metagenome; Human gut stool
68
143
+
Asn
GTT
[ENA]
¢þ
>WENV181461395
OGEM01011492
[OGEM] metagenome; Human gut stool
1338
1263
-
Asn
GTT
[ENA]
¢þ
>WENV181469468
OGET01001374
[OGET] metagenome; Human gut stool
5318
5393
+
Asn
GTT
[ENA]
¢þ
>WENV181483167
OGFK01000971
[OGFK] metagenome; Human gut stool
20566
20491
-
Asn
GTT
[ENA]
¢þ
>WENV181484160
OGFL01000626
[OGFL] metagenome; Human gut stool
68
143
+
Asn
GTT
[ENA]
¢þ
>WENV181507757
OGGP01000827
[OGGP] metagenome; Human gut stool
15842
15767
-
Asn
GTT
[ENA]
¢þ
>WENV181510685
OGGR01001504
[OGGR] metagenome; Human gut stool
68
143
+
Asn
GTT
[ENA]
¢þ
>WENV181524761
OGHI01000789
[OGHI] metagenome; Human gut stool
12594
12519
-
Asn
GTT
[ENA]
¢þ
>WENV181527607
OGHK01003669
[OGHK] metagenome; Human gut stool
8697
8622
-
Asn
GTT
[ENA]
¢þ
>WENV181536108
OGHV01002865
[OGHV] metagenome; Human gut stool
68
143
+
Asn
GTT
[ENA]
¢þ
>WENV181557271
OGIV01006455
[OGIV] metagenome; Human gut stool
3964
3889
-
Asn
GTT
[ENA]
¢þ
>WENV181560583
OGJC01000582
[OGJC] metagenome; Human gut stool
65
140
+
Asn
GTT
[ENA]
¢þ
>WENV181568851
OGJK01010004
[OGJK] metagenome; Human gut stool
3964
3889
-
Asn
GTT
[ENA]
¢þ
>WENV181569897
OGJM01001029
[OGJM] metagenome; Human gut stool
68
143
+
Asn
GTT
[ENA]
¢þ
>WENV181588492
OGKI01003087
[OGKI] metagenome; Human gut stool
68
143
+
Asn
GTT
[ENA]
¢þ
>WENV181589546
OGKL01005087
[OGKL] metagenome; Human gut stool
68
143
+
Asn
GTT
[ENA]
¢þ
>WENV181590278
OGKN01000490
[OGKN] metagenome; Human gut stool
20119
20044
-
Asn
GTT
[ENA]
¢þ
>WENV181599457
OGLC01000186
[OGLC] metagenome; Human gut stool
53312
53237
-
Asn
GTT
[ENA]
¢þ
>WENV181606049
OGLL01004728
[OGLL] metagenome; Human gut stool
68
143
+
Asn
GTT
[ENA]
¢þ
>WENV181608951
OGLN01003826
[OGLN] metagenome; Human gut stool
68
143
+
Asn
GTT
[ENA]
¢þ
>WENV181617441
OGMA01020625
[OGMA] metagenome; Human gut stool
816
741
-
Asn
GTT
[ENA]
¢þ
>WENV181623508
OGMI01000616
[OGMI] metagenome; Human gut stool
13608
13533
-
Asn
GTT
[ENA]
¢þ
>WENV181636232
OGMZ01001267
[OGMZ] metagenome; Human gut stool
68
143
+
Asn
GTT
[ENA]
¢þ
>WENV181644360
OGNL01022764
[OGNL] metagenome; Human gut stool
711
636
-
Asn
GTT
[ENA]
¢þ
>WENV181649375
OGNS01000434
[OGNS] metagenome; Human gut stool
24840
24765
-
Asn
GTT
[ENA]
¢þ
>WENV181819860
OGUB01017199
[OGUB] metagenome; Human gut stool
68
143
+
Asn
GTT
[ENA]
¢þ
>WENV181822542
OGUG01008901
[OGUG] metagenome; Human gut stool
505
430
-
Asn
GTT
[ENA]
¢þ
>WENV181823155
OGUJ01000023
[OGUJ] metagenome; Human gut stool
133521
133446
-
Asn
GTT
[ENA]
¢þ
>WENV181859315
OGWQ01000820
[OGWQ] human gut metagenome; faeces
21312
21237
-
Asn
GTT
[ENA]
¢þ
>WENV181860550
OGWR01001487
[OGWR] human gut metagenome; faeces
18715
18640
-
Asn
GTT
[ENA]
¢þ
>WENV181865213
OGWU01012405
[OGWU] human gut metagenome; faeces
104
29
-
Asn
GTT
[ENA]
¢þ
>WENV181868223
OGWW01039229
[OGWW] human gut metagenome; faeces
619
544
-
Asn
GTT
[ENA]
¢þ
>WENV181878305
OGXE01002243
[OGXE] human gut metagenome; faeces
14846
14771
-
Asn
GTT
[ENA]
¢þ
>WENV181892321
OGXP01001012
[OGXP] human gut metagenome; faeces
26503
26428
-
Asn
GTT
[ENA]
¢þ
>WENV181894168
OGXQ01031868
[OGXQ] human gut metagenome; faeces
464
389
-
Asn
GTT
[ENA]
¢þ
>WENV181905674
OGXY01001239
[OGXY] human gut metagenome; faeces
18733
18658
-
Asn
GTT
[ENA]
¢þ
>WENV181932004
OGYQ01024314
[OGYQ] human gut metagenome; faeces
90
165
+
Asn
GTT
[ENA]
¢þ
>WENV181940265
OGYX01033886
[OGYX] human gut metagenome; faeces
1032
1107
+
Asn
GTT
[ENA]
¢þ
>WENV181948311
OGZE01001330
[OGZE] human gut metagenome; faeces
14823
14748
-
Asn
GTT
[ENA]
¢þ
>WENV181952318
OGZI01000158
[OGZI] human gut metagenome; faeces
1892
1967
+
Asn
GTT
[ENA]
¢þ
>WENV181987181
OHAM01025892
[OHAM] human gut metagenome; faeces
1130
1055
-
Asn
GTT
[ENA]
¢þ
>WENV182064627
OHEZ01003257
[OHEZ] human gut metagenome; feces
1007
932
-
Asn
GTT
[ENA]
¢þ
>WENV182124389
OHJQ01029014
[OHJQ] human gut metagenome; feces
801
726
-
Asn
GTT
[ENA]
¢þ
>WENV182146202
OHKZ01002111
[OHKZ] human gut metagenome; feces
3862
3937
+
Asn
GTT
[ENA]
¢þ
>WENV182173523
OHNB01000664
[OHNB] human gut metagenome; feces
87
12
-
Asn
GTT
[ENA]
¢þ
>WENV182177763
OHNK01004028
[OHNK] human gut metagenome; feces
3660
3735
+
Asn
GTT
[ENA]
¢þ
>WENV182206943
OHPV01042221
[OHPV] human gut metagenome; feces
529
454
-
Asn
GTT
[ENA]
¢þ
>WENV182496541
OITG01000777
[OITG] human gut metagenome; human gut
3864
3939
+
Asn
GTT
[ENA]
¢þ
>WENV182501630
OIUD01010352
[OIUD] human gut metagenome; human gut
596
521
-
Asn
GTT
[ENA]
¢þ
>WENV182501967
OIUG01006457
[OIUG] human gut metagenome; human gut
511
436
-
Asn
GTT
[ENA]
¢þ
>WENV182503128
OIUN01008687
[OIUN] human gut metagenome; human gut
64
139
+
Asn
GTT
[ENA]
¢þ
>WENV182504321
OIUT01010704
[OIUT] human gut metagenome; human gut
542
467
-
Asn
GTT
[ENA]
¢þ
>WENV182907948
OKTF01002693
[OKTF] human gut metagenome; feces
384
459
+
Asn
GTT
[ENA]
¢þ
>WENV182984251
OKZL01002304
[OKZL] human gut metagenome; human gut
870
795
-
Asn
GTT
[ENA]
¢þ
>WENV183009348
OLDP01011055
[OLDP] human gut metagenome; human gut
592
517
-
Asn
GTT
[ENA]
¢þ
>WENV183014917
OLEM01005854
[OLEM] human gut metagenome; human gut
795
720
-
Asn
GTT
[ENA]
¢þ
>WENV183116001
OLNQ01039551
[OLNQ] human gut metagenome; faeces
65
140
+
Asn
GTT
[ENA]
¢þ
>WENV183402030
OLZU01004225
[OLZU] human gut metagenome; feces
3787
3862
+
Asn
GTT
[ENA]
¢þ
>WENV183497820
OMGN01046911
[OMGN] human gut metagenome; feces
562
487
-
Asn
GTT
[ENA]
¢þ
>WENV183525982
ONZU01013674
[ONZU] human gut metagenome; human gut
81
6
-
Asn
GTT
[ENA]
¢þ
>WENV183530479
OOAA01001699
[OOAA] human gut metagenome; human gut
5707
5782
+
Asn
GTT
[ENA]
¢þ
>WENV183576887
OOCJ01002110
[OOCJ] human gut metagenome; human gut
7457
7382
-
Asn
GTT
[ENA]
¢þ
>WENV183576987
OOCJ01004248
[OOCJ] human gut metagenome; human gut
95
170
+
Asn
GTT
[ENA]
¢þ
>WENV183581301
OOCN01014055
[OOCN] human gut metagenome; human gut
1009
934
-
Asn
GTT
[ENA]
¢þ
>C181160925
CP028102
Fusobacteriota
Fusobacterium mortiferum ATCC 9817 [CP028102]
661564
661639
+
Asn
GTT
-
¡û
>C181160971
CP028102
Fusobacteriota
Fusobacterium mortiferum ATCC 9817 [CP028102]
304474
304399
-
Asn
GTT
-
¡û
>C181160988
CP028103
Fusobacteriota
Fusobacterium varium ATCC 27725 [CP028103]
1170019
1170094
+
Asn
GTT
-
¡û
>C181160991
CP028103
Fusobacteriota
Fusobacterium varium ATCC 27725 [CP028103]
1282182
1282257
+
Asn
GTT
-
¡û
>C181161100
CP028106
Fusobacteriota
Fusobacterium gonidiaformans ATCC 25563 [CP028106]
553741
553816
+
Asn
GTT
-
¡û
>C181161143
CP028106
Fusobacteriota
Fusobacterium gonidiaformans ATCC 25563 [CP028106]
1030
955
-
Asn
GTT
-
¡û
>C191016048
CP019306
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme F1260 [CP019306]
2151219
2151144
-
Asn
GTT
-
¡û
>C191016049
CP019306
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme F1260 [CP019306]
1943231
1943156
-
Asn
GTT
-
¡û
>C191113352
CP033837
Fusobacteriota
Fusobacterium necrophorum FDAARGOS_565 [CP033837]
1380048
1380123
+
Asn
GTT
-
¡û
>C191113353
CP033837
Fusobacteriota
Fusobacterium necrophorum FDAARGOS_565 [CP033837]
1558922
1558997
+
Asn
GTT
-
¡û
>C191210233
LR134390
Fusobacteriota
Fusobacterium varium NCTC10560 [LR134390]
2960348
2960273
-
Asn
GTT
-
¡û
>C191210236
LR134390
Fusobacteriota
Fusobacterium varium NCTC10560 [LR134390]
2848222
2848147
-
Asn
GTT
-
¡û
>W141559444
JHWT01000003
Fusobacteriota
Fusobacterium necrophorum HUN048 [JHWT]
37942
37867
-
Asn
GTT
[ENA]
¡û
>W141559447
JHWT01000013
Fusobacteriota
Fusobacterium necrophorum HUN048 [JHWT]
344
419
+
Asn
GTT
[ENA]
¡û
>W1910194456
FAUS01000008
Fusobacteriota
Fusobacterium sp. [FAUS]
1380347
1380422
+
Asn
GTT
[ENA]
¡û
>W1910194494
FAUS01000008
Fusobacteriota
Fusobacterium sp. [FAUS]
997598
997523
-
Asn
GTT
[ENA]
¡û
>W1911160138
NPNE01000006
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme P1_LM [NPNE]
158243
158168
-
Asn
GTT
[ENA]
¡û
>W1810832243
QSOW01000034
Fusobacteriota
Fusobacterium varium TM07-10 [QSOW]
29567
29492
-
Asn
GTT
[ENA]
¡û
>W1610949586
LVDY01000005
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDY]
37755
37680
-
Asn
GTT
[ENA]
¡û
>W1610949618
LVDZ01000002
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDZ]
76632
76557
-
Asn
GTT
[ENA]
¡û
>W1610949634
LVDZ01000011
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVDZ]
37755
37680
-
Asn
GTT
[ENA]
¡û
>W1610950096
LVEQ01000019
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEQ]
3228
3303
+
Asn
GTT
[ENA]
¡û
>W1610950101
LVEQ01000022
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEQ]
202039
201964
-
Asn
GTT
[ENA]
¡û
>W1610950125
LVER01000022
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVER]
148574
148499
-
Asn
GTT
[ENA]
¡û
>W1610950185
LVES01000007
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVES]
2808
2883
+
Asn
GTT
[ENA]
¡û
>W1610950201
LVES01000024
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVES]
180579
180504
-
Asn
GTT
[ENA]
¡û
>W1610950221
LVET01000012
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVET]
65
140
+
Asn
GTT
[ENA]
¡û
>W1610950248
LVET01000053
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVET]
145815
145740
-
Asn
GTT
[ENA]
¡û
>W1610950294
LVEV01000001
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEV]
65
140
+
Asn
GTT
[ENA]
¡û
>W1610950358
LVEW01000033
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEW]
217634
217559
-
Asn
GTT
[ENA]
¡û
>W1610950423
LVEY01000010
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEY]
37755
37680
-
Asn
GTT
[ENA]
¡û
>W1610950459
LVEY01000070
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEY]
65
140
+
Asn
GTT
[ENA]
¡û
>W1610950486
LVEZ01000032
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVEZ]
183443
183368
-
Asn
GTT
[ENA]
¡û
>W1610950533
LVFA01000061
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFA]
274
349
+
Asn
GTT
[ENA]
¡û
>W1610950583
LVFC01000009
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFC]
37754
37679
-
Asn
GTT
[ENA]
¡û
>W1610950619
LVFC01000041
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFC]
181426
181351
-
Asn
GTT
[ENA]
¡û
>W1610950711
LVFE01000033
Fusobacteriota
Fusobacterium necrophorum subsp. funduliforme [LVFE]
183305
183230
-
Asn
GTT
[ENA]
¡û
>W1710510390
FMXX01000027
Fusobacteriota
Fusobacterium necrophorum [FMXX]
295
370
+
Asn
GTT
[ENA]
¡û
>W1710510394
FMXX01000030
Fusobacteriota
Fusobacterium necrophorum [FMXX]
295
370
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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