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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.363863 (24 seq.)
>W1930038981
QWET01000004
Bacteroidota
Mariniphaga sediminis SY21 [QWET]
336741
336668
-
Gly
TCC
[ENA]
¡û
>W2030033215
QWET01000004
Bacteroidota
Mariniphaga sediminis SY21 [QWET]
336741
336668
-
Gly
TCC
[ENA]
¡û
>W2030034423
RAPN01000003
Bacteroidota
Mangrovibacterium diazotrophicum DSM 27148 [RAPN]
305676
305749
+
Gly
TCC
[ENA]
¡û
>W2030034424
RAPN01000004
Bacteroidota
Mangrovibacterium diazotrophicum DSM 27148 [RAPN]
251214
251287
+
Gly
TCC
[ENA]
¡û
>W2030041783
SNWI01000001
Bacteroidota
Sunxiuqinia elliptica 114D [SNWI]
1323564
1323491
-
Gly
TCC
[ENA]
¡û
>W2030041784
SNWI01000003
Bacteroidota
Sunxiuqinia elliptica 114D [SNWI]
27882
27809
-
Gly
TCC
[ENA]
¡û
>W2030041805
SNWV01000011
Bacteroidota
Sunxiuqinia elliptica 114D_o [SNWV]
1324109
1324036
-
Gly
TCC
[ENA]
¡û
>W2030041806
SNWV01000015
Bacteroidota
Sunxiuqinia elliptica 114D_o [SNWV]
27882
27809
-
Gly
TCC
[ENA]
¡û
>W2030047943
VCHY01000006
Bacteroidota
Labilibacter sp. CG51 [VCHY]
202157
202230
+
Gly
TCC
[ENA]
¡û
>C243000005
AP018694
Bacteroidota
Aquipluma nitroreducens MeG22 [AP018694]
3863531
3863604
+
Gly
TCC
-
¡û
>C243002528
CP046401
Bacteroidota
Maribellus comscasis WC007 [CP046401]
1286254
1286181
-
Gly
TCC
-
¡û
>W1730010231
FQUM01000007
Bacteroidota
Mariniphaga anaerophila [FQUM]
21061
21136
+
Gly
TCC
[ENA]
¡û
>W1730026845
MENH01000170
Bacteroidota
Bacteroidetes bacterium GWA2_40_14 [MENH]
14197
14122
-
Gly
TCC
[ENA]
¡û
>W1730026848
MENJ01000025
Bacteroidota
Bacteroidetes bacterium GWA2_42_15 [MENJ]
232848
232923
+
Gly
TCC
[ENA]
¡û
>W1730026849
MENJ01000033
Bacteroidota
Bacteroidetes bacterium GWA2_42_15 [MENJ]
45738
45665
-
Gly
TCC
[ENA]
¡û
>W1730026858
MENO01000070
Bacteroidota
Bacteroidetes bacterium GWC2_40_13 [MENO]
14992
14917
-
Gly
TCC
[ENA]
¡û
>W1730026869
MENS01000051
Bacteroidota
Bacteroidetes bacterium GWD2_40_43 [MENS]
70426
70351
-
Gly
TCC
[ENA]
¡û
>W1730026884
MENY01000029
Bacteroidota
Bacteroidetes bacterium GWE2_40_63 [MENY]
31731
31656
-
Gly
TCC
[ENA]
¡û
>W1730026890
MEOB01000021
Bacteroidota
Bacteroidetes bacterium GWE2_42_39 [MEOB]
13116
13041
-
Gly
TCC
[ENA]
¡û
>W1730026891
MEOB01000051
Bacteroidota
Bacteroidetes bacterium GWE2_42_39 [MEOB]
236817
236890
+
Gly
TCC
[ENA]
¡û
>W1730026907
MEOJ01000067
Bacteroidota
Bacteroidetes bacterium GWF2_40_13 [MEOJ]
31677
31602
-
Gly
TCC
[ENA]
¡û
>W1730026915
MEOO01000008
Bacteroidota
Bacteroidetes bacterium GWF2_42_66 [MEOO]
236837
236910
+
Gly
TCC
[ENA]
¡û
>W1730026916
MEOO01000047
Bacteroidota
Bacteroidetes bacterium GWF2_42_66 [MEOO]
13108
13033
-
Gly
TCC
[ENA]
¡û
>W1730026942
MEPN01000034
Bacteroidota
Bacteroidetes bacterium RIFOXYC2_FULL_40_12 [MEPN]
15594
15669
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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