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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.3641 (61 seq.)
>W1710946655
LOSD01000006
Betaproteobacteria
Achromobacter xylosoxidans [LOSD]
4366166
4366071
-
SeC
TCA
[ENA]
¡û
>W1711095568
LTGY01000043
Betaproteobacteria
Achromobacter xylosoxidans HMSC070F04 [LTGY]
73185
73090
-
SeC
TCA
[ENA]
¡û
>W1711107620
LTSZ01000013
Betaproteobacteria
Achromobacter xylosoxidans HMSC057D05 [LTSZ]
9328
9233
-
SeC
TCA
[ENA]
¡û
>W1711115004
LTZT01000387
Betaproteobacteria
Achromobacter xylosoxidans HMSC15D03 [LTZT]
341
436
+
SeC
TCA
[ENA]
¡û
>W1711187798
LWPU01000405
Betaproteobacteria
Achromobacter xylosoxidans HMSC18C08 [LWPU]
332
427
+
SeC
TCA
[ENA]
¡û
>W1711466599
MJMN01000001
Betaproteobacteria
Achromobacter xylosoxidans [MJMN]
1140901
1140806
-
SeC
TCA
[ENA]
¡û
>W1711466738
MJMP01000035
Betaproteobacteria
Achromobacter xylosoxidans [MJMP]
178104
178009
-
SeC
TCA
[ENA]
¡û
>W1711956616
NBTL01000001
Betaproteobacteria
Achromobacter xylosoxidans [NBTL]
503797
503702
-
SeC
TCA
[ENA]
¡û
>W141202784
AZHL01000295
Betaproteobacteria
Achromobacter xylosoxidans X02736 [AZHL]
15659
15754
+
SeC
TCA
[ENA]
¡û
>WENV170661199
JXWU01127722
[JXWU] soil metagenome; rice field; organic control Plot
265
360
+
SeC
TCA
[ENA]
¢þ
>C181210722
LS483395
Betaproteobacteria
Achromobacter xylosoxidans NCTC10808 [LS483395]
374605
374700
+
SeC
TCA
-
¡û
>C141011104
CP006958
Betaproteobacteria
Achromobacter xylosoxidans NBRC 15126 = ATCC 27061 [CP006958]
375556
375651
+
SeC
TCA
[Ensembl]
¡û
>W1810108831
PHGT01000004
Betaproteobacteria
Achromobacter xylosoxidans GAD3 [PHGT]
143600
143505
-
Sec
TCA
[ENA]
¡û
>W1810576196
QENE01000009
Betaproteobacteria
Achromobacter xylosoxidans 5146 [QENE]
176257
176162
-
Sec
TCA
[ENA]
¡û
>W1810624818
QHHO01000040
Betaproteobacteria
Achromobacter sp. RW408 [QHHO]
343018
343113
+
Sec
TCA
[ENA]
¡û
>C151051221
CP009448
Betaproteobacteria
Achromobacter xylosoxidans [CP009448]
370586
370681
+
SeC
TCA
[Ensembl]
¡û
>W11103708
ACRC01000055
Betaproteobacteria
Achromobacter xylosoxidans C54 [ACRC]
709
804
+
SeC
TCA
[ENA]
¡û
>W1511448490
JUZW01000933
Betaproteobacteria
Achromobacter xylosoxidans 618_AXYL [JUZW]
23669
23574
-
SeC
TCA
[ENA]
¡û
>W1511448502
JUZX01000164
Betaproteobacteria
Achromobacter xylosoxidans 617_AXYL [JUZX]
23686
23591
-
SeC
TCA
[ENA]
¡û
>W1511641999
LDVI01000156
Betaproteobacteria
Achromobacter xylosoxidans A7 [LDVI]
2722
2627
-
SeC
TCA
[ENA]
¡û
>W1511642028
LDVJ01000038
Betaproteobacteria
Achromobacter xylosoxidans A-8 [LDVJ]
11545
11640
+
SeC
TCA
[ENA]
¡û
>W1511642070
LDVK01000094
Betaproteobacteria
Achromobacter xylosoxidans A9 [LDVK]
7713
7618
-
SeC
TCA
[ENA]
¡û
>W1511642100
LDVL01000046
Betaproteobacteria
Achromobacter xylosoxidans A10 [LDVL]
11545
11640
+
SeC
TCA
[ENA]
¡û
>W1511642134
LDVM01000115
Betaproteobacteria
Achromobacter xylosoxidans A11 [LDVM]
9551
9646
+
SeC
TCA
[ENA]
¡û
>W1511642179
LDVN01000306
Betaproteobacteria
Achromobacter xylosoxidans A12 [LDVN]
6617
6522
-
SeC
TCA
[ENA]
¡û
>W1511642194
LDVO01000008
Betaproteobacteria
Achromobacter xylosoxidans A13 [LDVO]
74841
74746
-
SeC
TCA
[ENA]
¡û
>C161065012
CP014028
Betaproteobacteria
Achromobacter xylosoxidans FDAARGOS_150 [CP014028]
3228906
3229001
+
SeC
TCA
-
¡û
>C161106089
LN831029
Betaproteobacteria
Achromobacter xylosoxidans NCTC10807 [LN831029]
374604
374699
+
SeC
TCA
[Ensembl]
¡û
>W1610077094
BCZG01000016
Betaproteobacteria
Achromobacter xylosoxidans NBRC 15126 = ATCC 27061 [BCZG]
26764
26859
+
SeC
TCA
[ENA]
¡û
>W1610093299
CYSW01000006
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608629 [CYSW]
26527
26622
+
SeC
TCA
[ENA]
¡û
>W1610093379
CYSY01000003
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608632 [CYSY]
140681
140586
-
SeC
TCA
[ENA]
¡û
>W1610093656
CYTD01000009
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608616 [CYTD]
266079
265984
-
SeC
TCA
[ENA]
¡û
>W1610093706
CYTE01000008
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608612 [CYTE]
28112
28207
+
SeC
TCA
[ENA]
¡û
>W1610093759
CYTF01000016
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608624 [CYTF]
137288
137193
-
SeC
TCA
[ENA]
¡û
>W1610093869
CYTH01000010
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608611 [CYTH]
256481
256386
-
SeC
TCA
[ENA]
¡û
>W1610093901
CYTI01000009
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608606 [CYTI]
253255
253160
-
SeC
TCA
[ENA]
¡û
>W1610093964
CYTJ01000010
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608618 [CYTJ]
26459
26554
+
SeC
TCA
[ENA]
¡û
>W1610094068
CYTL01000011
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608630 [CYTL]
26614
26709
+
SeC
TCA
[ENA]
¡û
>W1610094090
CYTM01000003
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608620 [CYTM]
343962
344057
+
SeC
TCA
[ENA]
¡û
>W1610094266
CYTP01000012
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608609 [CYTP]
133280
133185
-
SeC
TCA
[ENA]
¡û
>W1610094291
CYTQ01000009
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5663426 [CYTQ]
181403
181308
-
SeC
TCA
[ENA]
¡û
>W1610094392
CYTS01000008
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608619 [CYTS]
26451
26546
+
SeC
TCA
[ENA]
¡û
>W1610094652
CYTX01000013
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5663443 [CYTX]
26623
26718
+
SeC
TCA
[ENA]
¡û
>W1610094800
CYUA01000007
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5663447 [CYUA]
253557
253462
-
SeC
TCA
[ENA]
¡û
>C131019718
HE798385
Betaproteobacteria
Achromobacter xylosoxidans NH44784-1996 [HE798385]
1950034
1949939
-
SeC
TCA
-
¡û
>W1610802657
LOSD01000006
Betaproteobacteria
Achromobacter xylosoxidans [LOSD]
4366166
4366071
-
SeC
TCA
[ENA]
¡û
>W1710096507
CYSW01000006
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608629 [CYSW]
26527
26622
+
SeC
TCA
[ENA]
¡û
>W1710096587
CYSY01000003
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608632 [CYSY]
140681
140586
-
SeC
TCA
[ENA]
¡û
>W1710096699
CYTD01000009
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608616 [CYTD]
266079
265984
-
SeC
TCA
[ENA]
¡û
>W1710096749
CYTE01000008
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608612 [CYTE]
28112
28207
+
SeC
TCA
[ENA]
¡û
>W1710096802
CYTF01000016
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608624 [CYTF]
137288
137193
-
SeC
TCA
[ENA]
¡û
>W1710096912
CYTH01000010
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608611 [CYTH]
256481
256386
-
SeC
TCA
[ENA]
¡û
>W1710096944
CYTI01000009
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608606 [CYTI]
253255
253160
-
SeC
TCA
[ENA]
¡û
>W1710097007
CYTJ01000010
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608618 [CYTJ]
26459
26554
+
SeC
TCA
[ENA]
¡û
>W1710097111
CYTL01000011
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608630 [CYTL]
26614
26709
+
SeC
TCA
[ENA]
¡û
>W1710097133
CYTM01000003
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608620 [CYTM]
343962
344057
+
SeC
TCA
[ENA]
¡û
>W1710097267
CYTP01000012
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608609 [CYTP]
133280
133185
-
SeC
TCA
[ENA]
¡û
>W1710097292
CYTQ01000009
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5663426 [CYTQ]
181403
181308
-
SeC
TCA
[ENA]
¡û
>W1710097393
CYTS01000008
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608619 [CYTS]
26451
26546
+
SeC
TCA
[ENA]
¡û
>W1710097612
CYTX01000013
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5663443 [CYTX]
26623
26718
+
SeC
TCA
[ENA]
¡û
>W1710097760
CYUA01000007
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5663447 [CYUA]
253557
253462
-
SeC
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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