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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.3647 (17 seq.)
>W1711081292
LSSA01000400
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
36568
36477
-
Ser
GCT
[ENA]
¡û
>W1711584891
MNZA01000125
Cyanobacteriota
Oscillatoriales cyanobacterium CG2_30_44_21 [MNZA]
16219
16312
+
Ser
GCT
[ENA]
¡û
>WENV180391283
OBPM01073685
[OBPM] marine metagenome; ENVO:00002010
90
183
+
Ser
GCT
[ENA]
¢þ
>W141038675
ALWB01000153
Cyanobacteriota
Pseudanabaena biceps PCC 7429 [ALWB]
1204
1111
-
Ser
GCT
[ENA]
¡û
>WENV170640259
JFJP01015384
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
164
71
-
Ser
GCT
[ENA]
¢þ
>WENV171003192
NNBT01002290
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
572
663
+
Ser
GCT
[ENA]
¢þ
>C181004762
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
7548051
7548142
+
Ser
GCT
-
¡û
>C181043625
CP020114
Cyanobacteriota
Nodularia spumigena UHCC 0039 [CP020114]
3310829
3310922
+
Ser
GCT
-
¡û
>C181137787
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
854584
854491
-
Ser
GCT
-
¡û
>C191000309
AP017560
Cyanobacteriota
Pseudanabaena sp. ABRG5-3 [AP017560]
4556380
4556287
-
Ser
GCT
-
¡û
>W1910596303
LAGY01000054
Cyanobacteriota
Nostoc linckia z2 [LAGY]
15723
15630
-
Ser
GCT
[ENA]
¡û
>W1910872452
NDHW01000216
Cyanobacteriota
Pseudanabaena sp. SR411 [NDHW]
6238
6145
-
Ser
GCT
[ENA]
¡û
>C131004161
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
4840966
4840873
-
Ser
GCT
[Ensembl]
¡û
>C131004913
CP003642
Cyanobacteriota
Cylindrospermum stagnale PCC 7417 [CP003642]
3598492
3598585
+
Ser
GCT
[Ensembl]
¡û
>W1610634154
LIRE01000653
Cyanobacteriota
Pseudanabaena sp. 'Roaring Creek' [LIRE]
7521
7614
+
Ser
GCT
[ENA]
¡û
>W1610656818
LJOR01000079
Cyanobacteriota
Anabaena sp. 39858 [LJOR]
26992
26899
-
Ser
GCT
[ENA]
¡û
>W1710768531
LIRE01000653
Cyanobacteriota
Pseudanabaena sp. 'Roaring Creek' [LIRE]
7521
7614
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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