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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.365828 (87 seq.)
>W1711319102
MAZB01000169
Gammaproteobacteria
Candidatus Erwinia dacicola [MAZB]
2673
2747
+
Gln
CTG
[ENA]
¡û
>W131000321
AFHN01000007
Gammaproteobacteria
Erwinia amylovora ACW56400 [AFHN]
276721
276647
-
Gln
CTG
[ENA]
¡û
>W131000322
AFHN01000007
Gammaproteobacteria
Erwinia amylovora ACW56400 [AFHN]
276579
276505
-
Gln
CTG
[ENA]
¡û
>W131087750
AOCZ01000026
Gammaproteobacteria
Winslowiella toletana DAPP-PG 735 [AOCZ]
139
213
+
Gln
CTG
[ENA]
¡û
>W131243237
CAOX01000007
Gammaproteobacteria
Erwinia amylovora Ea356 [CAOX]
276546
276472
-
Gln
CTG
[ENA]
¡û
>W131243407
CAPA01000007
Gammaproteobacteria
Erwinia amylovora 01SFR-BO [CAPA]
187027
186953
-
Gln
CTG
[ENA]
¡û
>W131243408
CAPA01000007
Gammaproteobacteria
Erwinia amylovora 01SFR-BO [CAPA]
186885
186811
-
Gln
CTG
[ENA]
¡û
>W131243472
CAPB01000008
Gammaproteobacteria
Erwinia amylovora CFBP 1232 [CAPB]
276721
276647
-
Gln
CTG
[ENA]
¡û
>W131243473
CAPB01000008
Gammaproteobacteria
Erwinia amylovora CFBP 1232 [CAPB]
276579
276505
-
Gln
CTG
[ENA]
¡û
>W131243545
CAPC01000006
Gammaproteobacteria
Erwinia amylovora UPN527 [CAPC]
276721
276647
-
Gln
CTG
[ENA]
¡û
>W131243546
CAPC01000006
Gammaproteobacteria
Erwinia amylovora UPN527 [CAPC]
276579
276505
-
Gln
CTG
[ENA]
¡û
>W131243606
CAPD01000013
Gammaproteobacteria
Erwinia amylovora Ea644 [CAPD]
233408
233334
-
Gln
CTG
[ENA]
¡û
>W131243667
CAPE01000011
Gammaproteobacteria
Erwinia amylovora MR1 [CAPE]
186556
186482
-
Gln
CTG
[ENA]
¡û
>W131243668
CAPE01000011
Gammaproteobacteria
Erwinia amylovora MR1 [CAPE]
186414
186340
-
Gln
CTG
[ENA]
¡û
>WENV181228903
OFEI01000306
[OFEI] insect metagenome; insect
1695
1621
-
Gln
CTG
[ENA]
¢þ
>WENV181232053
OFEL01000661
[OFEL] insect metagenome; insect
1695
1621
-
Gln
CTG
[ENA]
¢þ
>W141236029
BAYW01000006
Gammaproteobacteria
Erwinia amylovora NBRC 12687 [BAYW]
276716
276642
-
Gln
CTG
[ENA]
¡û
>W141236030
BAYW01000006
Gammaproteobacteria
Erwinia amylovora NBRC 12687 [BAYW]
276574
276500
-
Gln
CTG
[ENA]
¡û
>W141241868
CAHS01000013
Gammaproteobacteria
Erwinia piriflorinigrans CFBP 5888 [CAHS]
310003
309929
-
Gln
CTG
[ENA]
¡û
>W141241869
CAHS01000013
Gammaproteobacteria
Erwinia piriflorinigrans CFBP 5888 [CAHS]
309862
309788
-
Gln
CTG
[ENA]
¡û
>W141256248
CBVS010000006
Gammaproteobacteria
Erwinia amylovora LA635 [CBVS]
276522
276448
-
Gln
CTG
[ENA]
¡û
>W141256249
CBVS010000006
Gammaproteobacteria
Erwinia amylovora LA635 [CBVS]
276380
276306
-
Gln
CTG
[ENA]
¡û
>W141256305
CBVT010000006
Gammaproteobacteria
Erwinia amylovora LA636 [CBVT]
276520
276446
-
Gln
CTG
[ENA]
¡û
>W141256306
CBVT010000006
Gammaproteobacteria
Erwinia amylovora LA636 [CBVT]
276378
276304
-
Gln
CTG
[ENA]
¡û
>C181084905
CP023567
Gammaproteobacteria
Erwinia pyrifoliae EpK1/15 [CP023567]
1240163
1240089
-
Gln
CTG
-
¡û
>C181084906
CP023567
Gammaproteobacteria
Erwinia pyrifoliae EpK1/15 [CP023567]
1240021
1239947
-
Gln
CTG
-
¡û
>C181109731
CP024970
Gammaproteobacteria
Erwinia amylovora E-2 [CP024970]
1238993
1238919
-
Gln
CTG
-
¡û
>C181109732
CP024970
Gammaproteobacteria
Erwinia amylovora E-2 [CP024970]
1238851
1238777
-
Gln
CTG
-
¡û
>C191219821
LR217715
Gammaproteobacteria
Candidatus Erwinia haradaeae ErCikochiana [LR217715]
548524
548450
-
Gln
CTG
-
¡û
>C191219856
LR217720
Gammaproteobacteria
Candidatus Erwinia haradaeae ErCilaricifoliae [LR217720]
545656
545582
-
Gln
CTG
-
¡û
>C191219998
LR217737
Gammaproteobacteria
Candidatus Erwinia haradaeae ErCipiceae [LR217737]
563290
563216
-
Gln
CTG
-
¡û
>W141820902
JQNE01000001
Gammaproteobacteria
Erwinia sp. 9145 [JQNE]
1097609
1097535
-
Gln
CTG
[ENA]
¡û
>W1910664999
MCFB01000001
Gammaproteobacteria
Erwinia amylovora Ea321 [MCFB]
1188197
1188271
+
Gln
CTG
[ENA]
¡û
>W1910665000
MCFB01000001
Gammaproteobacteria
Erwinia amylovora Ea321 [MCFB]
1188339
1188413
+
Gln
CTG
[ENA]
¡û
>W1910803921
MTCH01000012
Gammaproteobacteria
Erwinia sp. OLMDLW33 [MTCH]
34082
34008
-
Gln
CTG
[ENA]
¡û
>W1911174231
NQJK01000001
Gammaproteobacteria
Erwinia amylovora MASHBO [NQJK]
387648
387574
-
Gln
CTG
[ENA]
¡û
>W1911174232
NQJK01000001
Gammaproteobacteria
Erwinia amylovora MASHBO [NQJK]
387506
387432
-
Gln
CTG
[ENA]
¡û
>W1911174296
NQJL01000001
Gammaproteobacteria
Erwinia amylovora VTDMSF02 [NQJL]
2678251
2678325
+
Gln
CTG
[ENA]
¡û
>W1911174297
NQJL01000001
Gammaproteobacteria
Erwinia amylovora VTDMSF02 [NQJL]
2678393
2678467
+
Gln
CTG
[ENA]
¡û
>W1911174372
NQJM01000001
Gammaproteobacteria
Erwinia amylovora RISTBO01-2 [NQJM]
2664079
2664153
+
Gln
CTG
[ENA]
¡û
>W1911174373
NQJM01000001
Gammaproteobacteria
Erwinia amylovora RISTBO01-2 [NQJM]
2664221
2664295
+
Gln
CTG
[ENA]
¡û
>W1911174522
NQJO01000001
Gammaproteobacteria
Erwinia amylovora CTBT3-1 [NQJO]
2673490
2673564
+
Gln
CTG
[ENA]
¡û
>W1911174523
NQJO01000001
Gammaproteobacteria
Erwinia amylovora CTBT3-1 [NQJO]
2673632
2673706
+
Gln
CTG
[ENA]
¡û
>W1911174681
NQJQ01000038
Gammaproteobacteria
Erwinia amylovora WSDA87-73 [NQJQ]
1188077
1188151
+
Gln
CTG
[ENA]
¡û
>W1911174682
NQJQ01000038
Gammaproteobacteria
Erwinia amylovora WSDA87-73 [NQJQ]
1188219
1188293
+
Gln
CTG
[ENA]
¡û
>W1911174825
NQJS01000026
Gammaproteobacteria
Erwinia amylovora UT5P4 [NQJS]
277114
277040
-
Gln
CTG
[ENA]
¡û
>W1911174826
NQJS01000026
Gammaproteobacteria
Erwinia amylovora UT5P4 [NQJS]
276972
276898
-
Gln
CTG
[ENA]
¡û
>W1911174895
NQJT01000011
Gammaproteobacteria
Erwinia amylovora OR6 [NQJT]
277102
277028
-
Gln
CTG
[ENA]
¡û
>W1911174896
NQJT01000011
Gammaproteobacteria
Erwinia amylovora OR6 [NQJT]
276960
276886
-
Gln
CTG
[ENA]
¡û
>W1911174973
NQJU01000032
Gammaproteobacteria
Erwinia amylovora OR1 [NQJU]
277102
277028
-
Gln
CTG
[ENA]
¡û
>W1911174974
NQJU01000032
Gammaproteobacteria
Erwinia amylovora OR1 [NQJU]
276960
276886
-
Gln
CTG
[ENA]
¡û
>W1911175012
NQJV01000028
Gammaproteobacteria
Erwinia amylovora NHWL02-2 [NQJV]
1043906
1043980
+
Gln
CTG
[ENA]
¡û
>W1911175013
NQJV01000028
Gammaproteobacteria
Erwinia amylovora NHWL02-2 [NQJV]
1044048
1044122
+
Gln
CTG
[ENA]
¡û
>W1911175077
NQJW01000003
Gammaproteobacteria
Erwinia amylovora NHSB01-1 [NQJW]
1188761
1188835
+
Gln
CTG
[ENA]
¡û
>W1911175078
NQJW01000003
Gammaproteobacteria
Erwinia amylovora NHSB01-1 [NQJW]
1188903
1188977
+
Gln
CTG
[ENA]
¡û
>W1911175145
NQJX01000007
Gammaproteobacteria
Erwinia amylovora MANB02-1 [NQJX]
184556
184630
+
Gln
CTG
[ENA]
¡û
>W1911175146
NQJX01000007
Gammaproteobacteria
Erwinia amylovora MANB02-1 [NQJX]
184698
184772
+
Gln
CTG
[ENA]
¡û
>W1911175257
NQJY01000023
Gammaproteobacteria
Erwinia amylovora LA092 [NQJY]
277096
277022
-
Gln
CTG
[ENA]
¡û
>W1911175258
NQJY01000023
Gammaproteobacteria
Erwinia amylovora LA092 [NQJY]
276954
276880
-
Gln
CTG
[ENA]
¡û
>W1911175390
NQKA01000064
Gammaproteobacteria
Erwinia amylovora CTST01-1 [NQKA]
1044325
1044399
+
Gln
CTG
[ENA]
¡û
>W1911175391
NQKA01000064
Gammaproteobacteria
Erwinia amylovora CTST01-1 [NQKA]
1044467
1044541
+
Gln
CTG
[ENA]
¡û
>W1911175460
NQKB01000056
Gammaproteobacteria
Erwinia amylovora CTMF03-1 [NQKB]
1044896
1044970
+
Gln
CTG
[ENA]
¡û
>W1911175461
NQKB01000056
Gammaproteobacteria
Erwinia amylovora CTMF03-1 [NQKB]
1045038
1045112
+
Gln
CTG
[ENA]
¡û
>W1911175508
NQKC01000048
Gammaproteobacteria
Erwinia amylovora CA3R [NQKC]
1183720
1183794
+
Gln
CTG
[ENA]
¡û
>W1911175509
NQKC01000048
Gammaproteobacteria
Erwinia amylovora CA3R [NQKC]
1183862
1183936
+
Gln
CTG
[ENA]
¡û
>W1911671428
QGAC01000002
Gammaproteobacteria
Erwinia persicina CFBP13511 [QGAC]
56733
56807
+
Gln
CTG
[ENA]
¡û
>W1911671429
QGAC01000002
Gammaproteobacteria
Erwinia persicina CFBP13511 [QGAC]
56874
56948
+
Gln
CTG
[ENA]
¡û
>W1810053906
PDET01000001
Gammaproteobacteria
Pantoea coffeiphila 342 [PDET]
439090
439016
-
Gln
CTG
[ENA]
¡û
>W1810053907
PDET01000001
Gammaproteobacteria
Pantoea coffeiphila 342 [PDET]
438947
438873
-
Gln
CTG
[ENA]
¡û
>C10105497
FN434113
Gammaproteobacteria
Erwinia amylovora CFBP1430 CFPB1430 [FN434113]
1202229
1202155
-
Gln
CTG
[Ensembl]
¡û
>C10105498
FN434113
Gammaproteobacteria
Erwinia amylovora CFBP1430 CFPB1430 [FN434113]
1202087
1202013
-
Gln
CTG
[Ensembl]
¡û
>C10105573
FN666575
Gammaproteobacteria
Erwinia amylovora ATCC 49946 [FN666575]
1239717
1239643
-
Gln
CTG
[Ensembl]
¡û
>C10105574
FN666575
Gammaproteobacteria
Erwinia amylovora ATCC 49946 [FN666575]
1239575
1239501
-
Gln
CTG
[Ensembl]
¡û
>C11108969
CP002124
Gammaproteobacteria
Erwinia sp. Ejp617 [CP002124]
2468197
2468123
-
Gln
CTG
[Ensembl]
¡û
>C11108970
CP002124
Gammaproteobacteria
Erwinia sp. Ejp617 [CP002124]
2468055
2467981
-
Gln
CTG
[Ensembl]
¡û
>W1511248247
JNVB01000004
Gammaproteobacteria
Erwinia oleae DAPP-PG531 [JNVB]
23632
23558
-
Gln
CTG
[ENA]
¡û
>W1610070799
BCTN01000009
Gammaproteobacteria
Erwinia persicina NBRC 102418 [BCTN]
189749
189675
-
Gln
CTG
[ENA]
¡û
>W1610070800
BCTN01000009
Gammaproteobacteria
Erwinia persicina NBRC 102418 [BCTN]
189608
189534
-
Gln
CTG
[ENA]
¡û
>W1610575678
LAGP01000040
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGP]
192527
192601
+
Gln
CTG
[ENA]
¡û
>W1610575679
LAGP01000040
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGP]
192671
192745
+
Gln
CTG
[ENA]
¡û
>W1610575732
LAGQ01000059
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGQ]
334442
334516
+
Gln
CTG
[ENA]
¡û
>W1611062375
MAZB01000169
Gammaproteobacteria
Candidatus Erwinia dacicola [MAZB]
2673
2747
+
Gln
CTG
[ENA]
¡û
>W1710068121
BCTN01000009
Gammaproteobacteria
Erwinia persicina NBRC 102418 [BCTN]
189749
189675
-
Gln
CTG
[ENA]
¡û
>W1710068122
BCTN01000009
Gammaproteobacteria
Erwinia persicina NBRC 102418 [BCTN]
189608
189534
-
Gln
CTG
[ENA]
¡û
>W1710693942
LAGP01000040
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGP]
192527
192601
+
Gln
CTG
[ENA]
¡û
>W1710693943
LAGP01000040
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGP]
192671
192745
+
Gln
CTG
[ENA]
¡û
>W1710693996
LAGQ01000059
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGQ]
334442
334516
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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